Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20815 and SM_b20816 are separated by 65 nucleotides SM_b20816 and SM_b20817 are separated by 84 nucleotides
SM_b20815: SM_b20815 - outer membrane protein assembly protein, at 602,786 to 604,453
_b20815
SM_b20816: SM_b20816 - hypothetical protein, at 604,519 to 605,808
_b20816
SM_b20817: SM_b20817 - LacI family transcriptional regulator, at 605,893 to 606,924
_b20817
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.525 kb on - strand, within SM_b20815 at 603.744 kb on + strand, within SM_b20815 at 603.744 kb on + strand, within SM_b20815 at 604.058 kb on - strand, within SM_b20815 at 604.068 kb on - strand, within SM_b20815 at 604.068 kb on - strand, within SM_b20815 at 604.215 kb on + strand, within SM_b20815 at 604.216 kb on - strand, within SM_b20815 at 604.482 kb on + strand at 604.520 kb on + strand at 604.520 kb on + strand at 604.521 kb on - strand at 604.521 kb on - strand at 605.053 kb on + strand, within SM_b20816 at 605.053 kb on + strand, within SM_b20816 at 605.061 kb on - strand, within SM_b20816 at 605.200 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816 at 605.791 kb on - strand at 605.899 kb on - strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.913 kb on - strand at 605.913 kb on - strand at 605.916 kb on + strand at 605.917 kb on - strand at 605.980 kb on - strand at 605.980 kb on - strand at 605.980 kb on - strand at 606.161 kb on + strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.285 kb on - strand, within SM_b20817 at 606.311 kb on + strand, within SM_b20817 at 606.428 kb on + strand, within SM_b20817 at 606.428 kb on + strand at 606.429 kb on - strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.690 kb on - strand, within SM_b20817 at 606.807 kb on - strand, within SM_b20817
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 603,525 - SM_b20815 0.44 -0.1 603,744 + SM_b20815 0.57 -2.7 603,744 + SM_b20815 0.57 -0.5 604,058 - SM_b20815 0.76 +1.8 604,068 - SM_b20815 0.77 +0.1 604,068 - SM_b20815 0.77 -1.0 604,215 + SM_b20815 0.86 -0.9 604,216 - SM_b20815 0.86 -1.8 604,482 + -0.2 604,520 + -0.4 604,520 + -0.6 604,521 - +0.1 604,521 - +2.1 605,053 + SM_b20816 0.41 +0.6 605,053 + SM_b20816 0.41 -0.2 605,061 - SM_b20816 0.42 -0.5 605,200 - SM_b20816 0.53 -0.3 605,333 - SM_b20816 0.63 -0.2 605,333 - SM_b20816 0.63 -1.1 605,791 - +0.7 605,899 - +1.4 605,912 + -0.8 605,912 + +0.5 605,912 + -0.3 605,912 + -1.5 605,912 + +0.1 605,913 - -1.1 605,913 - -1.2 605,916 + +0.2 605,917 - -0.5 605,980 - +2.5 605,980 - -0.4 605,980 - -0.4 606,161 + SM_b20817 0.26 +2.5 606,162 - SM_b20817 0.26 +0.3 606,162 - SM_b20817 0.26 -0.2 606,162 - SM_b20817 0.26 +0.3 606,162 - SM_b20817 0.26 -1.8 606,285 - SM_b20817 0.38 +0.1 606,311 + SM_b20817 0.41 +1.1 606,428 + SM_b20817 0.52 -0.8 606,428 + +3.1 606,429 - SM_b20817 0.52 -0.6 606,689 + SM_b20817 0.77 +0.8 606,689 + SM_b20817 0.77 -0.7 606,690 - SM_b20817 0.77 -0.8 606,807 - SM_b20817 0.89 -0.4
Or see this region's nucleotide sequence