Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20749 and SM_b20750 are separated by 19 nucleotides SM_b20750 and SM_b20751 are separated by 30 nucleotides SM_b20751 and SM_b20752 are separated by 46 nucleotides
SM_b20749: SM_b20749 - D-mannonate oxidoreductase, at 1,538,076 to 1,539,539
_b20749
SM_b20750: SM_b20750 - dehydrogenase, at 1,539,559 to 1,540,308
_b20750
SM_b20751: SM_b20751 - 3-hydroxyisobutyrate dehydrogenase, at 1,540,339 to 1,541,235
_b20751
SM_b20752: SM_b20752 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,541,282 to 1,542,352
_b20752
Position (kb) 1539
1540
1541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1538.630 kb on + strand, within SM_b20749 at 1538.664 kb on - strand, within SM_b20749 at 1538.979 kb on + strand, within SM_b20749 at 1538.980 kb on - strand, within SM_b20749 at 1539.118 kb on - strand, within SM_b20749 at 1539.537 kb on + strand at 1540.015 kb on + strand, within SM_b20750 at 1540.018 kb on - strand, within SM_b20750 at 1540.235 kb on + strand at 1540.430 kb on + strand, within SM_b20751 at 1540.430 kb on + strand, within SM_b20751 at 1540.589 kb on + strand, within SM_b20751 at 1540.589 kb on + strand, within SM_b20751 at 1540.589 kb on + strand, within SM_b20751 at 1540.590 kb on - strand, within SM_b20751 at 1540.623 kb on + strand, within SM_b20751 at 1540.623 kb on + strand, within SM_b20751 at 1540.852 kb on - strand, within SM_b20751 at 1541.018 kb on + strand, within SM_b20751 at 1541.284 kb on - strand at 1541.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,538,630 + SM_b20749 0.38 -0.4 1,538,664 - SM_b20749 0.40 +1.9 1,538,979 + SM_b20749 0.62 +0.4 1,538,980 - SM_b20749 0.62 -0.6 1,539,118 - SM_b20749 0.71 +1.3 1,539,537 + -0.4 1,540,015 + SM_b20750 0.61 -3.0 1,540,018 - SM_b20750 0.61 -1.2 1,540,235 + -1.1 1,540,430 + SM_b20751 0.10 -0.5 1,540,430 + SM_b20751 0.10 +3.9 1,540,589 + SM_b20751 0.28 -0.0 1,540,589 + SM_b20751 0.28 +0.4 1,540,589 + SM_b20751 0.28 +0.3 1,540,590 - SM_b20751 0.28 -1.7 1,540,623 + SM_b20751 0.32 +0.1 1,540,623 + SM_b20751 0.32 -0.5 1,540,852 - SM_b20751 0.57 -0.1 1,541,018 + SM_b20751 0.76 +0.7 1,541,284 - -1.0 1,541,284 - -0.3
Or see this region's nucleotide sequence