Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20663 and SM_b20664 are separated by 118 nucleotides SM_b20664 and SM_b20665 are separated by 76 nucleotides SM_b20665 and SM_b20666 are separated by 283 nucleotides SM_b20666 and SM_b20667 are separated by 16 nucleotides
SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284
_b20663
SM_b20664: SM_b20664 - GntR family transcriptional regulator, at 1,465,403 to 1,466,092
_b20664
SM_b20665: SM_b20665 - partial transposase of insertion sequence ISRm17 protein, at 1,466,169 to 1,466,822
_b20665
SM_b20666: SM_b20666 - aldolase, at 1,467,106 to 1,467,783
_b20666
SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804
_b20667
Position (kb)
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.276 kb on + strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.394 kb on - strand at 1465.482 kb on + strand, within SM_b20664 at 1465.483 kb on - strand, within SM_b20664 at 1465.528 kb on - strand, within SM_b20664 at 1465.537 kb on + strand, within SM_b20664 at 1465.537 kb on + strand, within SM_b20664 at 1465.539 kb on + strand, within SM_b20664 at 1465.539 kb on + strand, within SM_b20664 at 1465.540 kb on - strand, within SM_b20664 at 1465.540 kb on - strand, within SM_b20664 at 1465.540 kb on - strand, within SM_b20664 at 1465.540 kb on - strand, within SM_b20664 at 1465.540 kb on - strand, within SM_b20664 at 1465.545 kb on + strand, within SM_b20664 at 1465.546 kb on - strand, within SM_b20664 at 1465.594 kb on - strand, within SM_b20664 at 1465.777 kb on - strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.002 kb on + strand, within SM_b20664 at 1466.059 kb on + strand at 1466.059 kb on + strand at 1466.065 kb on + strand at 1466.065 kb on + strand at 1466.065 kb on + strand at 1466.065 kb on + strand at 1466.065 kb on + strand at 1466.065 kb on + strand at 1466.066 kb on - strand at 1466.066 kb on - strand at 1466.136 kb on + strand at 1466.154 kb on + strand at 1466.155 kb on - strand at 1466.155 kb on - strand at 1466.280 kb on - strand, within SM_b20665 at 1466.280 kb on - strand, within SM_b20665 at 1466.280 kb on - strand, within SM_b20665 at 1466.291 kb on + strand, within SM_b20665 at 1466.963 kb on + strand at 1467.090 kb on + strand at 1467.101 kb on + strand at 1467.101 kb on + strand at 1467.101 kb on + strand at 1467.108 kb on - strand at 1467.193 kb on - strand, within SM_b20666 at 1467.228 kb on - strand, within SM_b20666 at 1467.228 kb on - strand, within SM_b20666 at 1467.329 kb on + strand, within SM_b20666 at 1467.330 kb on - strand, within SM_b20666 at 1467.387 kb on - strand, within SM_b20666 at 1467.422 kb on + strand, within SM_b20666 at 1467.423 kb on - strand, within SM_b20666 at 1467.425 kb on + strand, within SM_b20666 at 1467.425 kb on + strand, within SM_b20666 at 1467.539 kb on + strand, within SM_b20666 at 1467.539 kb on + strand, within SM_b20666 at 1467.694 kb on + strand, within SM_b20666 at 1467.695 kb on - strand, within SM_b20666 at 1467.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,465,268 - -0.1 1,465,268 - -0.5 1,465,268 - +0.3 1,465,268 - -2.2 1,465,276 + +0.6 1,465,277 - +1.0 1,465,277 - +0.2 1,465,277 - +0.5 1,465,277 - -1.6 1,465,277 - -0.6 1,465,394 - +0.6 1,465,482 + SM_b20664 0.11 -0.3 1,465,483 - SM_b20664 0.12 -0.3 1,465,528 - SM_b20664 0.18 +0.5 1,465,537 + SM_b20664 0.19 -0.4 1,465,537 + SM_b20664 0.19 +2.6 1,465,539 + SM_b20664 0.20 -1.4 1,465,539 + SM_b20664 0.20 +0.6 1,465,540 - SM_b20664 0.20 -1.4 1,465,540 - SM_b20664 0.20 +0.8 1,465,540 - SM_b20664 0.20 +0.4 1,465,540 - SM_b20664 0.20 -1.1 1,465,540 - SM_b20664 0.20 +0.2 1,465,545 + SM_b20664 0.21 -0.3 1,465,546 - SM_b20664 0.21 -0.8 1,465,594 - SM_b20664 0.28 -0.7 1,465,777 - SM_b20664 0.54 -0.3 1,466,002 + SM_b20664 0.87 +0.7 1,466,002 + SM_b20664 0.87 -0.3 1,466,002 + SM_b20664 0.87 -0.9 1,466,002 + SM_b20664 0.87 +1.4 1,466,002 + SM_b20664 0.87 -1.5 1,466,002 + SM_b20664 0.87 -0.8 1,466,059 + -0.8 1,466,059 + -3.6 1,466,065 + +0.1 1,466,065 + +0.5 1,466,065 + -0.0 1,466,065 + -0.4 1,466,065 + +1.9 1,466,065 + -2.2 1,466,066 - -0.7 1,466,066 - +0.5 1,466,136 + +0.7 1,466,154 + -0.2 1,466,155 - +0.2 1,466,155 - -0.3 1,466,280 - SM_b20665 0.17 -0.3 1,466,280 - SM_b20665 0.17 -1.5 1,466,280 - SM_b20665 0.17 -0.4 1,466,291 + SM_b20665 0.19 -1.3 1,466,963 + +0.0 1,467,090 + +0.8 1,467,101 + +1.2 1,467,101 + +2.8 1,467,101 + -1.3 1,467,108 - +2.9 1,467,193 - SM_b20666 0.13 +0.7 1,467,228 - SM_b20666 0.18 -0.1 1,467,228 - SM_b20666 0.18 +1.0 1,467,329 + SM_b20666 0.33 -0.9 1,467,330 - SM_b20666 0.33 -0.3 1,467,387 - SM_b20666 0.41 -0.3 1,467,422 + SM_b20666 0.47 -1.8 1,467,423 - SM_b20666 0.47 -1.0 1,467,425 + SM_b20666 0.47 +1.6 1,467,425 + SM_b20666 0.47 -0.0 1,467,539 + SM_b20666 0.64 -1.1 1,467,539 + SM_b20666 0.64 +0.9 1,467,694 + SM_b20666 0.87 -0.3 1,467,695 - SM_b20666 0.87 +0.7 1,467,821 - +0.5
Or see this region's nucleotide sequence