Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20607 and SM_b20608 are separated by 32 nucleotides SM_b20608 and SM_b20609 are separated by 306 nucleotides SM_b20609 and SM_b20610 overlap by 14 nucleotides
SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490
_b20607
SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861
_b20608
SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548
_b20609
SM_b20610: SM_b20610 - two-component response regulator protein, at 1,625,535 to 1,626,464
_b20610
Position (kb)
1622
1623
1624
1625
1626 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1621.262 kb on - strand, within SM_b20607 at 1621.262 kb on - strand, within SM_b20607 at 1621.279 kb on + strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.454 kb on + strand at 1621.454 kb on + strand at 1621.455 kb on - strand at 1621.455 kb on - strand at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.608 kb on + strand, within SM_b20608 at 1621.713 kb on - strand, within SM_b20608 at 1622.115 kb on + strand at 1622.115 kb on + strand at 1622.207 kb on + strand at 1622.208 kb on - strand at 1622.208 kb on - strand at 1622.209 kb on + strand at 1622.210 kb on - strand at 1622.243 kb on + strand at 1622.244 kb on - strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.357 kb on - strand at 1622.367 kb on - strand at 1622.444 kb on + strand at 1622.532 kb on - strand, within SM_b20609 at 1622.532 kb on - strand, within SM_b20609 at 1622.608 kb on - strand, within SM_b20609 at 1622.608 kb on - strand, within SM_b20609 at 1622.787 kb on - strand, within SM_b20609 at 1623.089 kb on + strand, within SM_b20609 at 1623.089 kb on + strand, within SM_b20609 at 1623.090 kb on - strand, within SM_b20609 at 1623.090 kb on - strand, within SM_b20609 at 1623.090 kb on - strand, within SM_b20609 at 1623.090 kb on - strand, within SM_b20609 at 1623.092 kb on + strand, within SM_b20609 at 1623.108 kb on - strand, within SM_b20609 at 1623.108 kb on - strand, within SM_b20609 at 1623.108 kb on - strand, within SM_b20609 at 1623.314 kb on + strand, within SM_b20609 at 1623.314 kb on + strand, within SM_b20609 at 1623.314 kb on + strand, within SM_b20609 at 1623.314 kb on + strand, within SM_b20609 at 1623.315 kb on - strand, within SM_b20609 at 1623.315 kb on - strand, within SM_b20609 at 1623.315 kb on - strand, within SM_b20609 at 1623.452 kb on + strand, within SM_b20609 at 1623.452 kb on + strand, within SM_b20609 at 1623.453 kb on - strand, within SM_b20609 at 1623.557 kb on + strand, within SM_b20609 at 1623.558 kb on - strand, within SM_b20609 at 1623.559 kb on + strand, within SM_b20609 at 1623.560 kb on - strand, within SM_b20609 at 1623.560 kb on - strand, within SM_b20609 at 1623.728 kb on + strand, within SM_b20609 at 1624.049 kb on + strand, within SM_b20609 at 1624.205 kb on + strand, within SM_b20609 at 1624.406 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.730 kb on + strand, within SM_b20609 at 1624.900 kb on + strand, within SM_b20609 at 1624.901 kb on - strand, within SM_b20609 at 1624.910 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.051 kb on - strand, within SM_b20609 at 1625.283 kb on - strand at 1625.468 kb on + strand at 1625.468 kb on + strand at 1625.468 kb on + strand at 1625.572 kb on + strand at 1625.572 kb on + strand at 1625.573 kb on - strand at 1625.573 kb on - strand at 1625.573 kb on - strand at 1625.644 kb on + strand, within SM_b20610 at 1625.882 kb on + strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,621,262 - SM_b20607 0.51 +0.2 1,621,262 - SM_b20607 0.51 +1.0 1,621,279 + SM_b20607 0.54 -0.4 1,621,280 - SM_b20607 0.55 -0.7 1,621,280 - SM_b20607 0.55 -1.3 1,621,454 + -0.8 1,621,454 + +1.0 1,621,455 - -0.5 1,621,455 - -0.3 1,621,566 + SM_b20608 0.13 -3.4 1,621,566 + SM_b20608 0.13 -0.3 1,621,566 + SM_b20608 0.13 -0.7 1,621,566 + SM_b20608 0.13 +0.1 1,621,567 - SM_b20608 0.13 -1.2 1,621,567 - SM_b20608 0.13 +3.0 1,621,608 + SM_b20608 0.25 -1.3 1,621,713 - SM_b20608 0.56 +1.1 1,622,115 + -0.3 1,622,115 + +0.2 1,622,207 + +0.4 1,622,208 - -1.1 1,622,208 - -0.1 1,622,209 + -0.4 1,622,210 - -0.7 1,622,243 + +0.0 1,622,244 - -1.7 1,622,356 + +0.1 1,622,356 + +0.3 1,622,356 + -0.5 1,622,357 - +0.1 1,622,367 - +0.5 1,622,444 + +0.4 1,622,532 - SM_b20609 0.11 -0.4 1,622,532 - SM_b20609 0.11 -0.3 1,622,608 - SM_b20609 0.13 +0.6 1,622,608 - SM_b20609 0.13 +1.3 1,622,787 - SM_b20609 0.18 -0.7 1,623,089 + SM_b20609 0.27 +0.0 1,623,089 + SM_b20609 0.27 -2.6 1,623,090 - SM_b20609 0.27 -0.3 1,623,090 - SM_b20609 0.27 -1.6 1,623,090 - SM_b20609 0.27 -0.6 1,623,090 - SM_b20609 0.27 -1.6 1,623,092 + SM_b20609 0.27 +0.3 1,623,108 - SM_b20609 0.28 +0.1 1,623,108 - SM_b20609 0.28 -0.4 1,623,108 - SM_b20609 0.28 -1.1 1,623,314 + SM_b20609 0.34 +0.0 1,623,314 + SM_b20609 0.34 +0.8 1,623,314 + SM_b20609 0.34 +0.6 1,623,314 + SM_b20609 0.34 -1.5 1,623,315 - SM_b20609 0.34 -0.4 1,623,315 - SM_b20609 0.34 -2.2 1,623,315 - SM_b20609 0.34 -0.3 1,623,452 + SM_b20609 0.38 -0.7 1,623,452 + SM_b20609 0.38 +0.3 1,623,453 - SM_b20609 0.38 -0.3 1,623,557 + SM_b20609 0.41 -0.3 1,623,558 - SM_b20609 0.41 -1.0 1,623,559 + SM_b20609 0.41 +0.5 1,623,560 - SM_b20609 0.41 +0.0 1,623,560 - SM_b20609 0.41 -0.7 1,623,728 + SM_b20609 0.46 +0.8 1,624,049 + SM_b20609 0.56 +0.2 1,624,205 + SM_b20609 0.60 -1.1 1,624,406 + SM_b20609 0.66 -0.7 1,624,606 + SM_b20609 0.72 -0.4 1,624,606 + SM_b20609 0.72 +0.3 1,624,606 + SM_b20609 0.72 -1.0 1,624,606 + SM_b20609 0.72 -1.3 1,624,606 + SM_b20609 0.72 -2.0 1,624,730 + SM_b20609 0.76 -2.4 1,624,900 + SM_b20609 0.81 -1.9 1,624,901 - SM_b20609 0.81 -0.6 1,624,910 + SM_b20609 0.81 +0.2 1,625,050 + SM_b20609 0.85 -1.0 1,625,050 + SM_b20609 0.85 +0.5 1,625,050 + SM_b20609 0.85 -1.0 1,625,051 - SM_b20609 0.85 -2.0 1,625,283 - -1.7 1,625,468 + -0.1 1,625,468 + +0.3 1,625,468 + -0.7 1,625,572 + +0.4 1,625,572 + -0.9 1,625,573 - +0.6 1,625,573 - -0.5 1,625,573 - +0.8 1,625,644 + SM_b20610 0.12 -1.7 1,625,882 + SM_b20610 0.37 -3.1 1,626,184 - SM_b20610 0.70 +1.7 1,626,184 - SM_b20610 0.70 +0.5 1,626,184 - SM_b20610 0.70 +0.7 1,626,210 + SM_b20610 0.73 +1.4 1,626,210 + SM_b20610 0.73 +0.7 1,626,210 + SM_b20610 0.73 -0.4 1,626,393 + -1.9 1,626,393 + +1.3 1,626,393 + +0.2 1,626,393 + -0.5 1,626,393 + -0.3 1,626,393 + -0.1 1,626,393 + -0.4 1,626,393 + -3.0 1,626,393 + -2.8 1,626,393 + -0.1 1,626,393 + +1.0 1,626,393 + -0.5 1,626,394 - -2.4 1,626,394 - -2.0 1,626,394 - -0.9 1,626,394 - +1.3 1,626,394 - -2.3
Or see this region's nucleotide sequence