Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20527 and SM_b20528 are separated by 79 nucleotides SM_b20528 and SM_b20529 overlap by 14 nucleotides SM_b20529 and SM_b20530 are separated by 32 nucleotides
SM_b20527: SM_b20527 - hypothetical protein, at 552,144 to 552,578
_b20527
SM_b20528: SM_b20528 - hypothetical protein, at 552,658 to 553,458
_b20528
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
Position (kb) 552
553
554 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 551.682 kb on - strand at 551.711 kb on + strand at 551.711 kb on + strand at 551.899 kb on + strand at 551.900 kb on - strand at 552.092 kb on + strand at 552.093 kb on - strand at 552.209 kb on + strand, within SM_b20527 at 552.210 kb on - strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.406 kb on + strand, within SM_b20527 at 552.880 kb on - strand, within SM_b20528 at 552.880 kb on - strand, within SM_b20528 at 553.059 kb on - strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.160 kb on + strand, within SM_b20528 at 553.161 kb on - strand, within SM_b20528 at 553.288 kb on + strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.446 kb on + strand at 553.532 kb on + strand at 553.547 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.744 kb on - strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.881 kb on + strand, within SM_b20529 at 553.882 kb on - strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.973 kb on - strand, within SM_b20529 at 553.974 kb on + strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.120 kb on - strand, within SM_b20529 at 554.151 kb on + strand, within SM_b20529 at 554.152 kb on - strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 551,682 - -4.2 551,711 + -0.6 551,711 + -0.2 551,899 + +0.6 551,900 - -1.1 552,092 + -2.5 552,093 - +0.8 552,209 + SM_b20527 0.15 -1.8 552,210 - SM_b20527 0.15 +0.6 552,353 + SM_b20527 0.48 +0.5 552,353 + SM_b20527 0.48 +3.4 552,353 + SM_b20527 0.48 +2.2 552,353 + SM_b20527 0.48 -0.3 552,354 - SM_b20527 0.48 -0.2 552,354 - SM_b20527 0.48 +2.0 552,406 + SM_b20527 0.60 -0.7 552,880 - SM_b20528 0.28 +0.6 552,880 - SM_b20528 0.28 -0.2 553,059 - SM_b20528 0.50 -0.2 553,121 + SM_b20528 0.58 -1.6 553,121 + SM_b20528 0.58 +0.3 553,127 + SM_b20528 0.59 -0.9 553,127 + SM_b20528 0.59 -1.0 553,135 + SM_b20528 0.60 +0.4 553,135 + SM_b20528 0.60 -0.8 553,160 + SM_b20528 0.63 -1.8 553,161 - SM_b20528 0.63 +0.1 553,288 + SM_b20528 0.79 -0.1 553,289 - SM_b20528 0.79 -2.5 553,289 - SM_b20528 0.79 -0.4 553,446 + +1.2 553,532 + +0.2 553,547 + SM_b20529 0.11 -0.0 553,589 + SM_b20529 0.15 -1.9 553,589 + SM_b20529 0.15 -0.0 553,691 - SM_b20529 0.26 -1.1 553,691 - SM_b20529 0.26 +0.8 553,691 - SM_b20529 0.26 -0.2 553,743 + SM_b20529 0.32 +1.2 553,743 + SM_b20529 0.32 -1.3 553,743 + SM_b20529 0.32 +1.2 553,743 + SM_b20529 0.32 -0.2 553,744 - SM_b20529 0.32 +1.9 553,748 + SM_b20529 0.33 +0.1 553,748 + SM_b20529 0.33 -0.5 553,749 - SM_b20529 0.33 -2.8 553,749 - SM_b20529 0.33 +0.9 553,881 + SM_b20529 0.47 +1.2 553,882 - SM_b20529 0.47 +0.2 553,928 + SM_b20529 0.52 +1.3 553,928 + SM_b20529 0.52 +1.9 553,928 + +1.2 553,972 + SM_b20529 0.57 -0.3 553,972 + SM_b20529 0.57 -1.3 553,972 + SM_b20529 0.57 +0.5 553,973 - SM_b20529 0.57 -2.6 553,974 + SM_b20529 0.57 +1.4 553,975 - SM_b20529 0.57 -0.1 553,975 - SM_b20529 0.57 +0.7 553,975 - SM_b20529 0.57 +0.1 554,001 + SM_b20529 0.60 -0.5 554,001 + SM_b20529 0.60 -0.6 554,001 + SM_b20529 0.60 -1.0 554,120 - SM_b20529 0.73 +0.6 554,151 + SM_b20529 0.76 -0.0 554,152 - SM_b20529 0.76 -0.0 554,205 + SM_b20529 0.82 +1.2 554,205 + SM_b20529 0.82 -0.4 554,205 + SM_b20529 0.82 -0.5 554,206 - SM_b20529 0.82 -1.8 554,206 - SM_b20529 0.82 +0.6
Or see this region's nucleotide sequence