Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20515

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20514 and SM_b20515 are separated by 89 nucleotidesSM_b20515 and SM_b20516 are separated by 67 nucleotides SM_b20514: SM_b20514 - protein-glutamate methyltransferase, at 536,420 to 537,637 _b20514 SM_b20515: SM_b20515 - chemotaxis methyltransferase, at 537,727 to 541,212 _b20515 SM_b20516: SM_b20516 - response regulator protein, at 541,280 to 541,606 _b20516 Position (kb) 537 538 539 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 536.780 kb on + strand, within SM_b20514at 536.781 kb on - strand, within SM_b20514at 536.828 kb on + strand, within SM_b20514at 536.829 kb on - strand, within SM_b20514at 536.853 kb on - strand, within SM_b20514at 536.853 kb on - strand, within SM_b20514at 537.110 kb on + strand, within SM_b20514at 537.111 kb on - strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strandat 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.259 kb on - strand, within SM_b20514at 537.329 kb on + strand, within SM_b20514at 537.329 kb on + strand, within SM_b20514at 537.330 kb on - strand, within SM_b20514at 537.342 kb on - strand, within SM_b20514at 537.362 kb on + strand, within SM_b20514at 537.363 kb on - strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.369 kb on - strand, within SM_b20514at 537.456 kb on - strand, within SM_b20514at 537.456 kb on - strandat 537.461 kb on + strand, within SM_b20514at 537.461 kb on + strand, within SM_b20514at 537.462 kb on - strand, within SM_b20514at 537.481 kb on + strand, within SM_b20514at 537.481 kb on + strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.485 kb on - strand, within SM_b20514at 537.519 kb on + strandat 537.588 kb on - strandat 537.599 kb on + strandat 537.601 kb on + strandat 537.602 kb on - strandat 537.623 kb on + strandat 537.623 kb on + strandat 537.623 kb on + strandat 537.624 kb on - strandat 537.624 kb on - strandat 537.625 kb on + strandat 537.626 kb on - strandat 537.626 kb on - strandat 537.626 kb on - strandat 537.628 kb on + strandat 537.628 kb on + strandat 537.629 kb on - strandat 537.629 kb on - strandat 537.629 kb on - strandat 537.660 kb on + strandat 537.660 kb on + strandat 537.810 kb on + strandat 537.956 kb on + strandat 537.956 kb on + strandat 537.956 kb on + strandat 537.957 kb on - strandat 537.958 kb on + strandat 537.958 kb on + strandat 537.959 kb on - strandat 537.985 kb on - strandat 538.198 kb on + strand, within SM_b20515at 538.198 kb on + strand, within SM_b20515at 538.199 kb on - strand, within SM_b20515at 538.254 kb on + strand, within SM_b20515at 538.255 kb on - strand, within SM_b20515at 538.255 kb on - strand, within SM_b20515at 538.257 kb on - strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.400 kb on - strand, within SM_b20515at 538.400 kb on - strand, within SM_b20515at 538.471 kb on + strand, within SM_b20515at 538.471 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.475 kb on - strand, within SM_b20515at 538.480 kb on + strand, within SM_b20515at 538.480 kb on + strand, within SM_b20515at 538.672 kb on + strand, within SM_b20515at 538.673 kb on - strand, within SM_b20515at 538.674 kb on + strand, within SM_b20515at 538.674 kb on + strand, within SM_b20515at 538.675 kb on - strand, within SM_b20515at 538.675 kb on - strand, within SM_b20515at 538.862 kb on - strand, within SM_b20515at 538.972 kb on + strand, within SM_b20515at 538.973 kb on - strand, within SM_b20515at 539.110 kb on - strand, within SM_b20515at 539.110 kb on - strand, within SM_b20515at 539.113 kb on + strand, within SM_b20515at 539.114 kb on - strand, within SM_b20515at 539.114 kb on - strand, within SM_b20515at 539.114 kb on - strand, within SM_b20515at 539.244 kb on - strand, within SM_b20515at 539.244 kb on - strand, within SM_b20515at 539.408 kb on + strand, within SM_b20515at 539.501 kb on - strand, within SM_b20515at 539.501 kb on - strand, within SM_b20515at 539.563 kb on - strand, within SM_b20515at 539.598 kb on - strand, within SM_b20515at 539.607 kb on + strand, within SM_b20515at 539.747 kb on + strand, within SM_b20515at 539.747 kb on + strand, within SM_b20515at 539.748 kb on - strand, within SM_b20515at 539.748 kb on - strand, within SM_b20515at 539.767 kb on + strand, within SM_b20515at 539.952 kb on + strand, within SM_b20515at 539.952 kb on + strand, within SM_b20515at 539.953 kb on - strand, within SM_b20515at 539.953 kb on - strand, within SM_b20515at 540.043 kb on - strand, within SM_b20515at 540.043 kb on - strand, within SM_b20515at 540.047 kb on - strand, within SM_b20515at 540.048 kb on + strand, within SM_b20515at 540.049 kb on - strand, within SM_b20515at 540.133 kb on + strand, within SM_b20515at 540.133 kb on + strand, within SM_b20515at 540.134 kb on - strand, within SM_b20515at 540.134 kb on - strand, within SM_b20515at 540.134 kb on - strand, within SM_b20515at 540.134 kb on - strand, within SM_b20515at 540.176 kb on + strand, within SM_b20515at 540.176 kb on + strand, within SM_b20515at 540.176 kb on + strand, within SM_b20515at 540.176 kb on + strand, within SM_b20515at 540.176 kb on + strand, within SM_b20515at 540.177 kb on - strand, within SM_b20515at 540.177 kb on - strand, within SM_b20515at 540.327 kb on - strand, within SM_b20515at 540.327 kb on - strand, within SM_b20515at 540.327 kb on - strand, within SM_b20515at 540.327 kb on - strand, within SM_b20515at 540.358 kb on + strand, within SM_b20515at 540.358 kb on + strand, within SM_b20515at 540.358 kb on + strand, within SM_b20515at 540.359 kb on - strand, within SM_b20515at 540.359 kb on - strand, within SM_b20515at 540.359 kb on - strand, within SM_b20515at 540.359 kb on - strand, within SM_b20515at 540.359 kb on - strand, within SM_b20515at 540.522 kb on - strand, within SM_b20515at 540.838 kb on + strand, within SM_b20515at 540.907 kb on - strandat 541.032 kb on + strandat 541.123 kb on - strandat 541.123 kb on - strandat 541.123 kb on - strandat 541.463 kb on + strand, within SM_b20516at 541.464 kb on - strand, within SM_b20516at 541.464 kb on - strand, within SM_b20516at 541.464 kb on - strand, within SM_b20516at 541.466 kb on - strand, within SM_b20516at 541.573 kb on + strand, within SM_b20516at 541.573 kb on + strand, within SM_b20516at 541.574 kb on - strandat 541.604 kb on + strandat 541.675 kb on + strandat 541.677 kb on - strandat 541.715 kb on + strandat 541.972 kb on - strandat 542.140 kb on + strandat 542.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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536,780 + SM_b20514 0.30 -0.4
536,781 - SM_b20514 0.30 +1.3
536,828 + SM_b20514 0.33 -0.3
536,829 - SM_b20514 0.34 +0.4
536,853 - SM_b20514 0.36 -0.7
536,853 - SM_b20514 0.36 -1.8
537,110 + SM_b20514 0.57 -0.1
537,111 - SM_b20514 0.57 -0.4
537,258 + SM_b20514 0.69 -0.3
537,258 + SM_b20514 0.69 +3.0
537,258 + +1.2
537,258 + SM_b20514 0.69 -1.2
537,258 + SM_b20514 0.69 -0.5
537,259 - SM_b20514 0.69 -0.8
537,329 + SM_b20514 0.75 -0.8
537,329 + SM_b20514 0.75 +0.0
537,330 - SM_b20514 0.75 -0.1
537,342 - SM_b20514 0.76 +0.2
537,362 + SM_b20514 0.77 -1.3
537,363 - SM_b20514 0.77 +1.2
537,368 + SM_b20514 0.78 +0.1
537,368 + SM_b20514 0.78 -0.2
537,368 + SM_b20514 0.78 +1.2
537,368 + SM_b20514 0.78 +0.6
537,368 + SM_b20514 0.78 -2.2
537,368 + SM_b20514 0.78 +2.0
537,369 - SM_b20514 0.78 -1.7
537,456 - SM_b20514 0.85 +1.9
537,456 - +0.2
537,461 + SM_b20514 0.85 +0.4
537,461 + SM_b20514 0.85 -2.6
537,462 - SM_b20514 0.86 -0.8
537,481 + SM_b20514 0.87 -0.3
537,481 + SM_b20514 0.87 +0.7
537,482 - SM_b20514 0.87 +0.5
537,482 - SM_b20514 0.87 +2.0
537,482 - SM_b20514 0.87 +0.3
537,482 - SM_b20514 0.87 -0.1
537,482 - SM_b20514 0.87 -0.4
537,482 - SM_b20514 0.87 +0.9
537,484 + SM_b20514 0.87 -0.1
537,484 + SM_b20514 0.87 +0.8
537,484 + SM_b20514 0.87 -1.6
537,484 + SM_b20514 0.87 -0.5
537,485 - SM_b20514 0.87 -0.5
537,519 + +0.8
537,588 - -1.2
537,599 + -0.4
537,601 + -0.4
537,602 - -0.0
537,623 + +0.9
537,623 + -1.7
537,623 + -0.8
537,624 - -0.2
537,624 - -0.2
537,625 + +0.3
537,626 - +0.7
537,626 - -0.1
537,626 - +0.4
537,628 + +0.2
537,628 + -0.0
537,629 - +0.5
537,629 - -1.1
537,629 - -0.2
537,660 + +0.1
537,660 + +0.5
537,810 + +0.6
537,956 + +0.5
537,956 + -2.7
537,956 + +1.5
537,957 - -1.5
537,958 + +0.4
537,958 + +0.1
537,959 - -0.2
537,985 - -0.2
538,198 + SM_b20515 0.14 -0.8
538,198 + SM_b20515 0.14 -0.1
538,199 - SM_b20515 0.14 +0.2
538,254 + SM_b20515 0.15 +1.1
538,255 - SM_b20515 0.15 -1.9
538,255 - SM_b20515 0.15 +0.2
538,257 - SM_b20515 0.15 -1.2
538,399 + SM_b20515 0.19 -3.6
538,399 + SM_b20515 0.19 -0.1
538,399 + SM_b20515 0.19 -1.4
538,399 + SM_b20515 0.19 -2.3
538,399 + SM_b20515 0.19 -2.3
538,399 + SM_b20515 0.19 -2.2
538,399 + SM_b20515 0.19 -1.2
538,399 + SM_b20515 0.19 +0.6
538,400 - SM_b20515 0.19 +0.3
538,400 - SM_b20515 0.19 +1.9
538,471 + SM_b20515 0.21 +0.6
538,471 + SM_b20515 0.21 +0.3
538,474 + SM_b20515 0.21 -0.4
538,474 + SM_b20515 0.21 -0.7
538,474 + SM_b20515 0.21 +2.8
538,474 + SM_b20515 0.21 -0.3
538,475 - SM_b20515 0.21 -2.3
538,480 + SM_b20515 0.22 -1.0
538,480 + SM_b20515 0.22 -0.1
538,672 + SM_b20515 0.27 -2.6
538,673 - SM_b20515 0.27 -1.2
538,674 + SM_b20515 0.27 -1.5
538,674 + SM_b20515 0.27 -3.4
538,675 - SM_b20515 0.27 +0.2
538,675 - SM_b20515 0.27 -2.2
538,862 - SM_b20515 0.33 +0.2
538,972 + SM_b20515 0.36 -2.0
538,973 - SM_b20515 0.36 -1.2
539,110 - SM_b20515 0.40 -0.9
539,110 - SM_b20515 0.40 -1.2
539,113 + SM_b20515 0.40 -0.3
539,114 - SM_b20515 0.40 -0.5
539,114 - SM_b20515 0.40 -0.3
539,114 - SM_b20515 0.40 +0.1
539,244 - SM_b20515 0.44 -1.2
539,244 - SM_b20515 0.44 -0.6
539,408 + SM_b20515 0.48 +0.1
539,501 - SM_b20515 0.51 -0.5
539,501 - SM_b20515 0.51 +0.6
539,563 - SM_b20515 0.53 +0.2
539,598 - SM_b20515 0.54 -0.1
539,607 + SM_b20515 0.54 +0.5
539,747 + SM_b20515 0.58 +0.3
539,747 + SM_b20515 0.58 -0.2
539,748 - SM_b20515 0.58 -0.1
539,748 - SM_b20515 0.58 +0.4
539,767 + SM_b20515 0.59 -1.8
539,952 + SM_b20515 0.64 -0.3
539,952 + SM_b20515 0.64 +0.3
539,953 - SM_b20515 0.64 -0.8
539,953 - SM_b20515 0.64 -0.6
540,043 - SM_b20515 0.66 +0.3
540,043 - SM_b20515 0.66 +0.3
540,047 - SM_b20515 0.67 +0.5
540,048 + SM_b20515 0.67 +0.1
540,049 - SM_b20515 0.67 -2.3
540,133 + SM_b20515 0.69 +0.2
540,133 + SM_b20515 0.69 +0.5
540,134 - SM_b20515 0.69 -0.8
540,134 - SM_b20515 0.69 -0.5
540,134 - SM_b20515 0.69 +0.9
540,134 - SM_b20515 0.69 -0.3
540,176 + SM_b20515 0.70 -0.3
540,176 + SM_b20515 0.70 +1.6
540,176 + SM_b20515 0.70 -1.3
540,176 + SM_b20515 0.70 -0.5
540,176 + SM_b20515 0.70 -1.9
540,177 - SM_b20515 0.70 -0.3
540,177 - SM_b20515 0.70 -0.9
540,327 - SM_b20515 0.75 -1.3
540,327 - SM_b20515 0.75 +0.1
540,327 - SM_b20515 0.75 -0.6
540,327 - SM_b20515 0.75 +0.7
540,358 + SM_b20515 0.75 +0.2
540,358 + SM_b20515 0.75 +0.7
540,358 + SM_b20515 0.75 -0.9
540,359 - SM_b20515 0.76 +2.2
540,359 - SM_b20515 0.76 +0.7
540,359 - SM_b20515 0.76 +0.2
540,359 - SM_b20515 0.76 -2.4
540,359 - SM_b20515 0.76 +0.2
540,522 - SM_b20515 0.80 +1.3
540,838 + SM_b20515 0.89 -0.1
540,907 - -1.1
541,032 + +0.6
541,123 - +0.3
541,123 - +0.6
541,123 - -0.6
541,463 + SM_b20516 0.56 -2.2
541,464 - SM_b20516 0.56 -0.0
541,464 - SM_b20516 0.56 +0.7
541,464 - SM_b20516 0.56 -0.9
541,466 - SM_b20516 0.57 +1.7
541,573 + SM_b20516 0.90 +0.6
541,573 + SM_b20516 0.90 +0.4
541,574 - +0.4
541,604 + -0.9
541,675 + -0.1
541,677 - -2.6
541,715 + -3.5
541,972 - +0.5
542,140 + -2.0
542,141 - -1.4

Or see this region's nucleotide sequence