Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20503 and SM_b20504 are separated by 65 nucleotides SM_b20504 and SM_b20505 are separated by 270 nucleotides
SM_b20503: SM_b20503 - sugar ABC transporter ATP-binding protein, at 524,197 to 525,735
_b20503
SM_b20504: SM_b20504 - sugar ABC transporter substrate-binding protein, at 525,801 to 526,802
_b20504
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 524.965 kb on + strand, within SM_b20503 at 525.077 kb on + strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.145 kb on - strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.386 kb on + strand, within SM_b20503 at 525.387 kb on - strand, within SM_b20503 at 525.661 kb on + strand at 525.661 kb on + strand at 525.803 kb on - strand at 525.822 kb on - strand at 525.838 kb on + strand at 525.999 kb on - strand, within SM_b20504 at 525.999 kb on - strand, within SM_b20504 at 526.000 kb on + strand, within SM_b20504 at 526.000 kb on + strand, within SM_b20504 at 526.001 kb on - strand, within SM_b20504 at 526.065 kb on + strand, within SM_b20504 at 526.068 kb on - strand, within SM_b20504 at 526.068 kb on - strand, within SM_b20504 at 526.068 kb on - strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.349 kb on - strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.426 kb on + strand, within SM_b20504 at 526.427 kb on - strand, within SM_b20504 at 526.432 kb on - strand, within SM_b20504 at 526.603 kb on + strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.685 kb on - strand, within SM_b20504 at 526.718 kb on - strand at 526.928 kb on + strand at 526.938 kb on + strand at 526.939 kb on - strand at 527.017 kb on - strand at 527.017 kb on - strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.061 kb on + strand at 527.062 kb on - strand at 527.062 kb on - strand at 527.188 kb on + strand, within SM_b20505 at 527.188 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.333 kb on - strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.644 kb on + strand, within SM_b20505 at 527.658 kb on + strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 524,965 + SM_b20503 0.50 +0.2 525,077 + SM_b20503 0.57 -1.2 525,078 - SM_b20503 0.57 +2.2 525,078 - SM_b20503 0.57 -1.3 525,078 - SM_b20503 0.57 +2.6 525,142 - SM_b20503 0.61 -1.4 525,142 - SM_b20503 0.61 -0.6 525,144 + SM_b20503 0.62 +1.8 525,144 + SM_b20503 0.62 -1.6 525,145 - SM_b20503 0.62 -2.3 525,146 + SM_b20503 0.62 -1.8 525,146 + SM_b20503 0.62 -0.6 525,146 + SM_b20503 0.62 -0.3 525,146 + SM_b20503 0.62 +0.9 525,146 + SM_b20503 0.62 -1.8 525,146 + SM_b20503 0.62 -0.1 525,146 + SM_b20503 0.62 +0.4 525,147 - SM_b20503 0.62 -1.0 525,147 - SM_b20503 0.62 +0.1 525,147 - SM_b20503 0.62 +0.2 525,147 - SM_b20503 0.62 -1.4 525,147 - SM_b20503 0.62 -0.6 525,386 + SM_b20503 0.77 +1.0 525,387 - SM_b20503 0.77 -0.2 525,661 + +0.0 525,661 + -0.1 525,803 - -0.1 525,822 - -1.0 525,838 + -1.6 525,999 - SM_b20504 0.20 -0.3 525,999 - SM_b20504 0.20 +1.9 526,000 + SM_b20504 0.20 +0.6 526,000 + SM_b20504 0.20 +0.5 526,001 - SM_b20504 0.20 -0.5 526,065 + SM_b20504 0.26 -0.4 526,068 - SM_b20504 0.27 -0.4 526,068 - SM_b20504 0.27 +0.6 526,068 - SM_b20504 0.27 -1.7 526,213 + SM_b20504 0.41 -0.0 526,213 + SM_b20504 0.41 -1.3 526,213 + SM_b20504 0.41 -1.3 526,214 - SM_b20504 0.41 +0.4 526,214 - SM_b20504 0.41 -2.0 526,349 - SM_b20504 0.55 -0.9 526,393 + SM_b20504 0.59 +0.4 526,393 + SM_b20504 0.59 +0.2 526,393 + SM_b20504 0.59 +2.8 526,393 + SM_b20504 0.59 -0.2 526,393 + SM_b20504 0.59 -0.5 526,393 + SM_b20504 0.59 +0.3 526,393 + SM_b20504 0.59 -0.1 526,393 + SM_b20504 0.59 -0.1 526,394 - SM_b20504 0.59 +0.6 526,394 - SM_b20504 0.59 -0.2 526,394 - SM_b20504 0.59 -0.3 526,394 - SM_b20504 0.59 -0.4 526,394 - SM_b20504 0.59 -2.1 526,397 + SM_b20504 0.59 +1.7 526,397 + SM_b20504 0.59 -1.4 526,426 + SM_b20504 0.62 +0.2 526,427 - SM_b20504 0.62 +0.2 526,432 - SM_b20504 0.63 -0.7 526,603 + SM_b20504 0.80 -0.2 526,622 - SM_b20504 0.82 -1.1 526,622 - SM_b20504 0.82 -0.1 526,685 - SM_b20504 0.88 -3.6 526,718 - +0.4 526,928 + +0.4 526,938 + +0.1 526,939 - -0.0 527,017 - +0.2 527,017 - -0.4 527,042 + -0.2 527,043 - -0.3 527,061 + -1.9 527,062 - +0.2 527,062 - +0.3 527,188 + SM_b20505 0.15 -1.2 527,188 + SM_b20505 0.15 -3.3 527,274 + SM_b20505 0.25 -0.4 527,274 + SM_b20505 0.25 +0.7 527,274 + SM_b20505 0.25 -0.5 527,274 + SM_b20505 0.25 -2.7 527,275 - SM_b20505 0.26 +1.2 527,275 - SM_b20505 0.26 -2.3 527,275 - SM_b20505 0.26 +0.6 527,333 - SM_b20505 0.33 +1.5 527,353 + SM_b20505 0.35 +0.6 527,353 + SM_b20505 0.35 +1.3 527,644 + SM_b20505 0.72 +0.2 527,658 + SM_b20505 0.74 -1.5 527,741 - SM_b20505 0.85 -1.0 527,741 - SM_b20505 0.85 +0.7 527,741 - SM_b20505 0.85 +0.4 527,741 - SM_b20505 0.85 +2.5 527,741 - SM_b20505 0.85 +0.2 527,759 + SM_b20505 0.87 -0.1 527,759 + SM_b20505 0.87 +0.2 527,759 + SM_b20505 0.87 +1.1
Or see this region's nucleotide sequence