Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20500

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20499 and SM_b20500 are separated by 11 nucleotidesSM_b20500 and SM_b20501 overlap by 4 nucleotides SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175 _b20499 SM_b20500: SM_b20500 - aldoketo reductase, at 521,187 to 522,182 _b20500 SM_b20501: SM_b20501 - transcriptional regulator, at 522,179 to 523,183 _b20501 Position (kb) 521 522 523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 520.187 kb on + strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.311 kb on - strand, within SM_b20499at 520.313 kb on + strand, within SM_b20499at 520.516 kb on + strand, within SM_b20499at 520.516 kb on + strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.521 kb on - strand, within SM_b20499at 520.521 kb on - strand, within SM_b20499at 520.553 kb on + strand, within SM_b20499at 520.553 kb on + strand, within SM_b20499at 520.554 kb on - strand, within SM_b20499at 520.554 kb on - strand, within SM_b20499at 520.643 kb on + strand, within SM_b20499at 520.644 kb on - strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.647 kb on - strand, within SM_b20499at 520.761 kb on - strand, within SM_b20499at 520.761 kb on - strand, within SM_b20499at 520.858 kb on + strand, within SM_b20499at 520.858 kb on + strand, within SM_b20499at 520.859 kb on - strand, within SM_b20499at 520.957 kb on - strand, within SM_b20499at 520.976 kb on + strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 521.188 kb on + strandat 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.650 kb on + strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 522.279 kb on - strandat 522.492 kb on + strand, within SM_b20501at 522.492 kb on + strand, within SM_b20501at 522.493 kb on - strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.785 kb on + strand, within SM_b20501at 522.811 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.815 kb on - strand, within SM_b20501at 522.841 kb on + strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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520,187 + SM_b20499 0.43 +0.4
520,188 - SM_b20499 0.43 -0.6
520,188 - SM_b20499 0.43 -2.3
520,188 - SM_b20499 0.43 -0.2
520,311 - SM_b20499 0.50 +1.5
520,313 + SM_b20499 0.50 -2.4
520,516 + SM_b20499 0.62 -1.0
520,516 + SM_b20499 0.62 -0.1
520,517 - SM_b20499 0.62 +0.5
520,517 - SM_b20499 0.62 -1.0
520,517 - SM_b20499 0.62 -0.7
520,517 - SM_b20499 0.62 -0.2
520,517 - SM_b20499 0.62 +0.3
520,520 + SM_b20499 0.62 -0.8
520,520 + SM_b20499 0.62 +1.2
520,520 + SM_b20499 0.62 -0.6
520,520 + SM_b20499 0.62 +1.2
520,521 - SM_b20499 0.62 -0.4
520,521 - SM_b20499 0.62 +0.2
520,553 + SM_b20499 0.64 -1.3
520,553 + SM_b20499 0.64 +0.4
520,554 - SM_b20499 0.64 +0.3
520,554 - SM_b20499 0.64 +0.1
520,643 + SM_b20499 0.69 +0.9
520,644 - SM_b20499 0.69 -0.0
520,646 + SM_b20499 0.69 -0.3
520,646 + SM_b20499 0.69 +0.5
520,646 + SM_b20499 0.69 -2.0
520,646 + SM_b20499 0.69 -3.0
520,647 - SM_b20499 0.69 -2.8
520,761 - SM_b20499 0.76 -0.5
520,761 - SM_b20499 0.76 -2.7
520,858 + SM_b20499 0.82 +0.6
520,858 + SM_b20499 0.82 -0.5
520,859 - SM_b20499 0.82 -1.2
520,957 - SM_b20499 0.87 +1.2
520,976 + SM_b20499 0.88 +0.4
520,977 - SM_b20499 0.89 -0.6
520,977 - SM_b20499 0.89 -2.7
520,977 - SM_b20499 0.89 +0.8
521,188 + +0.9
521,381 - SM_b20500 0.19 -4.3
521,381 - SM_b20500 0.19 -1.7
521,381 - SM_b20500 0.19 +0.1
521,381 - SM_b20500 0.19 -1.0
521,650 + SM_b20500 0.46 -0.9
521,651 - SM_b20500 0.47 -0.4
521,651 - SM_b20500 0.47 +0.7
521,779 + SM_b20500 0.59 -1.1
521,779 + SM_b20500 0.59 +1.3
521,780 - SM_b20500 0.60 -0.5
521,780 - SM_b20500 0.60 +0.1
521,790 - SM_b20500 0.61 -0.6
521,790 - SM_b20500 0.61 +0.5
521,791 + SM_b20500 0.61 +0.8
521,791 + SM_b20500 0.61 -1.2
521,792 - SM_b20500 0.61 -2.8
521,792 - SM_b20500 0.61 +0.2
521,792 - SM_b20500 0.61 +0.3
522,279 - -0.7
522,492 + SM_b20501 0.31 +0.2
522,492 + SM_b20501 0.31 -0.1
522,493 - SM_b20501 0.31 -1.7
522,697 + SM_b20501 0.52 +1.6
522,697 + SM_b20501 0.52 +2.2
522,699 + SM_b20501 0.52 +0.6
522,699 + SM_b20501 0.52 +0.7
522,700 - SM_b20501 0.52 +0.6
522,700 - SM_b20501 0.52 -0.2
522,700 - SM_b20501 0.52 +0.4
522,785 + SM_b20501 0.60 -0.5
522,811 + SM_b20501 0.63 +0.2
522,814 + SM_b20501 0.63 +0.7
522,814 + SM_b20501 0.63 +1.4
522,814 + SM_b20501 0.63 -0.6
522,815 - SM_b20501 0.63 -0.1
522,841 + SM_b20501 0.66 -0.5
522,842 - SM_b20501 0.66 -1.9
522,842 - SM_b20501 0.66 +0.3

Or see this region's nucleotide sequence