Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20429 and SM_b20430 are separated by 2 nucleotides SM_b20430 and SM_b20431 overlap by 1 nucleotides SM_b20431 and SM_b20432 overlap by 4 nucleotides SM_b20432 and SM_b20433 overlap by 4 nucleotides
SM_b20429: SM_b20429 - amino acid ABC transporter permease, at 444,243 to 444,902
_b20429
SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567
_b20430
SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352
_b20431
SM_b20432: SM_b20432 - threonine dehydratase, at 446,349 to 447,353
_b20432
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 444.816 kb on + strand, within SM_b20429 at 444.817 kb on - strand, within SM_b20429 at 445.118 kb on + strand, within SM_b20430 at 445.129 kb on - strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.131 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.224 kb on - strand, within SM_b20430 at 445.305 kb on + strand, within SM_b20430 at 445.359 kb on - strand, within SM_b20430 at 445.447 kb on + strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.452 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.498 kb on + strand, within SM_b20430 at 445.633 kb on - strand at 445.669 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.739 kb on - strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.997 kb on - strand, within SM_b20431 at 446.030 kb on - strand, within SM_b20431 at 446.251 kb on + strand, within SM_b20431 at 446.417 kb on - strand at 446.417 kb on - strand at 446.420 kb on + strand at 446.480 kb on - strand, within SM_b20432 at 446.508 kb on - strand, within SM_b20432 at 446.645 kb on + strand, within SM_b20432 at 446.884 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.960 kb on - strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.269 kb on + strand at 447.270 kb on - strand at 447.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 444,816 + SM_b20429 0.87 +1.3 444,817 - SM_b20429 0.87 -0.4 445,118 + SM_b20430 0.32 +0.8 445,129 - SM_b20430 0.34 +1.2 445,130 + SM_b20430 0.34 +0.7 445,130 + SM_b20430 0.34 -0.1 445,131 - SM_b20430 0.34 -2.5 445,209 - SM_b20430 0.46 -0.3 445,209 - SM_b20430 0.46 -0.2 445,209 - SM_b20430 0.46 +1.3 445,223 + SM_b20430 0.48 -0.3 445,223 + SM_b20430 0.48 +0.5 445,224 - SM_b20430 0.48 -0.2 445,305 + SM_b20430 0.60 +0.1 445,359 - SM_b20430 0.68 -1.4 445,447 + SM_b20430 0.82 -0.1 445,448 - SM_b20430 0.82 +1.3 445,448 - SM_b20430 0.82 -0.8 445,451 + SM_b20430 0.82 +0.5 445,451 + SM_b20430 0.82 -0.8 445,452 - SM_b20430 0.83 -0.3 445,458 - SM_b20430 0.83 +0.1 445,458 - SM_b20430 0.83 +0.6 445,498 + SM_b20430 0.89 -0.7 445,633 - -3.2 445,669 - SM_b20431 0.13 +0.6 445,721 - SM_b20431 0.20 -0.0 445,721 - SM_b20431 0.20 +0.2 445,739 - SM_b20431 0.22 -0.8 445,840 + SM_b20431 0.35 +0.2 445,840 + SM_b20431 0.35 +0.1 445,841 - SM_b20431 0.35 -0.4 445,841 - SM_b20431 0.35 +2.1 445,997 - SM_b20431 0.55 +0.5 446,030 - SM_b20431 0.59 +0.3 446,251 + SM_b20431 0.87 +0.4 446,417 - -1.8 446,417 - -2.5 446,420 + +1.5 446,480 - SM_b20432 0.13 +0.9 446,508 - SM_b20432 0.16 +0.5 446,645 + SM_b20432 0.29 -0.1 446,884 + SM_b20432 0.53 -0.0 446,959 + SM_b20432 0.61 +0.5 446,959 + SM_b20432 0.61 +0.9 446,959 + SM_b20432 0.61 -0.8 446,959 + SM_b20432 0.61 -0.0 446,960 - SM_b20432 0.61 +0.2 447,121 + SM_b20432 0.77 -0.1 447,121 + SM_b20432 0.77 +0.1 447,121 + SM_b20432 0.77 +0.0 447,122 - SM_b20432 0.77 -2.8 447,122 - SM_b20432 0.77 -0.8 447,269 + -0.1 447,270 - +0.8 447,270 - +0.0
Or see this region's nucleotide sequence