Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20428 and SM_b20429 are separated by 102 nucleotides SM_b20429 and SM_b20430 are separated by 2 nucleotides SM_b20430 and SM_b20431 overlap by 1 nucleotides
SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140
_b20428
SM_b20429: SM_b20429 - amino acid ABC transporter permease, at 444,243 to 444,902
_b20429
SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567
_b20430
SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352
_b20431
Position (kb) 444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.441 kb on + strand, within SM_b20428 at 443.547 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.874 kb on + strand, within SM_b20428 at 443.967 kb on + strand, within SM_b20428 at 444.078 kb on + strand at 444.139 kb on - strand at 444.261 kb on + strand at 444.262 kb on - strand at 444.402 kb on + strand, within SM_b20429 at 444.402 kb on + strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.404 kb on + strand, within SM_b20429 at 444.428 kb on + strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.453 kb on + strand, within SM_b20429 at 444.454 kb on - strand, within SM_b20429 at 444.478 kb on + strand, within SM_b20429 at 444.479 kb on - strand, within SM_b20429 at 444.535 kb on - strand, within SM_b20429 at 444.816 kb on + strand, within SM_b20429 at 444.817 kb on - strand, within SM_b20429 at 445.118 kb on + strand, within SM_b20430 at 445.129 kb on - strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.131 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.224 kb on - strand, within SM_b20430 at 445.305 kb on + strand, within SM_b20430 at 445.359 kb on - strand, within SM_b20430 at 445.447 kb on + strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.452 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.498 kb on + strand, within SM_b20430 at 445.633 kb on - strand at 445.669 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.739 kb on - strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 443,441 + SM_b20428 0.18 +1.0 443,547 + SM_b20428 0.30 -0.4 443,712 + SM_b20428 0.50 -0.3 443,712 + SM_b20428 0.50 -1.4 443,874 + SM_b20428 0.69 +0.5 443,967 + SM_b20428 0.80 -0.4 444,078 + -1.0 444,139 - +0.1 444,261 + -0.1 444,262 - +0.6 444,402 + SM_b20429 0.24 +0.1 444,402 + SM_b20429 0.24 -2.2 444,403 - SM_b20429 0.24 -0.4 444,403 - SM_b20429 0.24 +0.6 444,403 - SM_b20429 0.24 -1.5 444,404 + SM_b20429 0.24 -1.0 444,428 + SM_b20429 0.28 +0.4 444,429 - SM_b20429 0.28 -1.1 444,429 - SM_b20429 0.28 -3.0 444,453 + SM_b20429 0.32 -0.5 444,454 - SM_b20429 0.32 -0.1 444,478 + SM_b20429 0.36 -0.5 444,479 - SM_b20429 0.36 -0.2 444,535 - SM_b20429 0.44 +0.3 444,816 + SM_b20429 0.87 +1.3 444,817 - SM_b20429 0.87 -0.4 445,118 + SM_b20430 0.32 +0.8 445,129 - SM_b20430 0.34 +1.2 445,130 + SM_b20430 0.34 +0.7 445,130 + SM_b20430 0.34 -0.1 445,131 - SM_b20430 0.34 -2.5 445,209 - SM_b20430 0.46 -0.3 445,209 - SM_b20430 0.46 -0.2 445,209 - SM_b20430 0.46 +1.3 445,223 + SM_b20430 0.48 -0.3 445,223 + SM_b20430 0.48 +0.5 445,224 - SM_b20430 0.48 -0.2 445,305 + SM_b20430 0.60 +0.1 445,359 - SM_b20430 0.68 -1.4 445,447 + SM_b20430 0.82 -0.1 445,448 - SM_b20430 0.82 +1.3 445,448 - SM_b20430 0.82 -0.8 445,451 + SM_b20430 0.82 +0.5 445,451 + SM_b20430 0.82 -0.8 445,452 - SM_b20430 0.83 -0.3 445,458 - SM_b20430 0.83 +0.1 445,458 - SM_b20430 0.83 +0.6 445,498 + SM_b20430 0.89 -0.7 445,633 - -3.2 445,669 - SM_b20431 0.13 +0.6 445,721 - SM_b20431 0.20 -0.0 445,721 - SM_b20431 0.20 +0.2 445,739 - SM_b20431 0.22 -0.8 445,840 + SM_b20431 0.35 +0.2 445,840 + SM_b20431 0.35 +0.1 445,841 - SM_b20431 0.35 -0.4 445,841 - SM_b20431 0.35 +2.1
Or see this region's nucleotide sequence