Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20422 and SM_b20423 are separated by 5 nucleotides SM_b20423 and SM_b20424 are separated by 119 nucleotides
SM_b20422: SM_b20422 - oxidoreductase, at 436,049 to 437,128
_b20422
SM_b20423: SM_b20423 - hypothetical protein, at 437,134 to 438,510
_b20423
SM_b20424: SM_b20424 - succinate-semialdehyde dehydrogenase, at 438,630 to 440,126
_b20424
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 436.171 kb on + strand, within SM_b20422 at 436.172 kb on - strand, within SM_b20422 at 436.174 kb on - strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.243 kb on - strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.619 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.703 kb on - strand, within SM_b20422 at 436.705 kb on - strand, within SM_b20422 at 436.741 kb on - strand, within SM_b20422 at 436.776 kb on + strand, within SM_b20422 at 436.846 kb on + strand, within SM_b20422 at 436.972 kb on + strand, within SM_b20422 at 436.973 kb on - strand, within SM_b20422 at 437.037 kb on - strand at 437.050 kb on - strand at 437.050 kb on - strand at 437.147 kb on - strand at 437.628 kb on - strand, within SM_b20423 at 437.678 kb on + strand, within SM_b20423 at 437.748 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.786 kb on + strand, within SM_b20423 at 437.900 kb on + strand, within SM_b20423 at 437.901 kb on - strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.949 kb on - strand, within SM_b20423 at 437.952 kb on - strand, within SM_b20423 at 438.053 kb on + strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.113 kb on + strand, within SM_b20423 at 438.168 kb on - strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.257 kb on + strand, within SM_b20423 at 438.258 kb on - strand, within SM_b20423 at 438.260 kb on + strand, within SM_b20423 at 438.261 kb on - strand, within SM_b20423 at 438.315 kb on - strand, within SM_b20423 at 438.372 kb on + strand, within SM_b20423 at 438.383 kb on + strand at 438.383 kb on + strand at 438.384 kb on - strand at 438.565 kb on - strand at 438.652 kb on - strand at 438.656 kb on - strand at 438.851 kb on - strand, within SM_b20424 at 438.877 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.259 kb on + strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 436,171 + SM_b20422 0.11 +0.6 436,172 - SM_b20422 0.11 +0.1 436,174 - SM_b20422 0.12 -3.0 436,242 + SM_b20422 0.18 -0.5 436,242 + SM_b20422 0.18 +0.3 436,242 + SM_b20422 0.18 -2.4 436,243 - SM_b20422 0.18 +1.4 436,299 + SM_b20422 0.23 +0.3 436,299 + SM_b20422 0.23 -2.5 436,619 - SM_b20422 0.53 -0.2 436,624 - SM_b20422 0.53 -1.6 436,624 - SM_b20422 0.53 -0.1 436,703 - SM_b20422 0.61 +0.5 436,705 - SM_b20422 0.61 -1.6 436,741 - SM_b20422 0.64 -0.1 436,776 + SM_b20422 0.67 -0.5 436,846 + SM_b20422 0.74 +0.7 436,972 + SM_b20422 0.85 -2.2 436,973 - SM_b20422 0.86 +0.5 437,037 - +0.4 437,050 - -0.2 437,050 - -1.4 437,147 - +0.4 437,628 - SM_b20423 0.36 +0.9 437,678 + SM_b20423 0.40 +0.8 437,748 + SM_b20423 0.45 -0.4 437,753 + SM_b20423 0.45 +3.5 437,753 + SM_b20423 0.45 -2.7 437,754 - SM_b20423 0.45 +0.4 437,754 - SM_b20423 0.45 -2.0 437,786 + SM_b20423 0.47 +0.8 437,900 + SM_b20423 0.56 -0.4 437,901 - SM_b20423 0.56 -1.0 437,948 + SM_b20423 0.59 +0.6 437,948 + SM_b20423 0.59 -1.1 437,949 - SM_b20423 0.59 -1.6 437,952 - SM_b20423 0.59 +0.7 438,053 + SM_b20423 0.67 -0.4 438,111 - SM_b20423 0.71 +0.3 438,111 - SM_b20423 0.71 -0.5 438,111 - SM_b20423 0.71 +0.1 438,113 + SM_b20423 0.71 +2.2 438,168 - SM_b20423 0.75 -0.5 438,248 + SM_b20423 0.81 +0.6 438,248 + SM_b20423 0.81 -1.8 438,257 + SM_b20423 0.82 -0.2 438,258 - SM_b20423 0.82 -0.3 438,260 + SM_b20423 0.82 +1.1 438,261 - SM_b20423 0.82 -0.1 438,315 - SM_b20423 0.86 +1.5 438,372 + SM_b20423 0.90 -0.1 438,383 + +0.1 438,383 + +0.2 438,384 - -2.5 438,565 - +0.2 438,652 - -2.9 438,656 - +0.6 438,851 - SM_b20424 0.15 -1.2 438,877 - SM_b20424 0.16 -1.4 439,199 - SM_b20424 0.38 +1.3 439,199 - SM_b20424 0.38 -0.1 439,259 + SM_b20424 0.42 +0.3 439,260 - SM_b20424 0.42 -0.0 439,260 - SM_b20424 0.42 -0.5
Or see this region's nucleotide sequence