Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20380 and SM_b20381 are separated by 15 nucleotides SM_b20381 and SM_b20382 overlap by 4 nucleotides SM_b20382 and SM_b20383 are separated by 125 nucleotides
SM_b20380: SM_b20380 - ABC transporter ATP-binding protein, at 391,371 to 392,420
_b20380
SM_b20381: SM_b20381 - ABC transporter permease, at 392,436 to 393,266
_b20381
SM_b20382: SM_b20382 - ABC transporter permease, at 393,263 to 394,114
_b20382
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
Position (kb) 393
394
395 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 392.363 kb on + strand at 392.364 kb on - strand at 392.364 kb on - strand at 392.377 kb on + strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.559 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.982 kb on - strand, within SM_b20381 at 393.130 kb on + strand, within SM_b20381 at 393.131 kb on - strand, within SM_b20381 at 393.143 kb on + strand, within SM_b20381 at 393.312 kb on + strand at 393.312 kb on + strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.404 kb on + strand, within SM_b20382 at 393.404 kb on + strand, within SM_b20382 at 393.405 kb on - strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.528 kb on + strand, within SM_b20382 at 393.585 kb on + strand at 393.585 kb on + strand, within SM_b20382 at 393.585 kb on + strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.641 kb on - strand, within SM_b20382 at 393.768 kb on + strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.783 kb on + strand, within SM_b20382 at 393.784 kb on - strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 394.014 kb on + strand, within SM_b20382 at 394.015 kb on - strand, within SM_b20382 at 394.196 kb on + strand at 394.241 kb on + strand at 394.241 kb on + strand at 394.563 kb on + strand, within SM_b20383 at 394.564 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.877 kb on + strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 395.104 kb on + strand, within SM_b20383 at 395.105 kb on - strand, within SM_b20383
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 392,363 + -0.5 392,364 - +0.4 392,364 - -0.5 392,377 + +0.1 392,378 - -0.4 392,378 - +0.3 392,378 - -0.8 392,378 - +0.4 392,378 - -0.6 392,425 - -0.3 392,425 - -0.9 392,425 - -0.4 392,559 + SM_b20381 0.15 -1.0 392,887 + SM_b20381 0.54 +0.7 392,887 + SM_b20381 0.54 -0.5 392,917 + SM_b20381 0.58 +0.0 392,917 + SM_b20381 0.58 -1.0 392,917 + SM_b20381 0.58 -0.7 392,917 + SM_b20381 0.58 +1.1 392,918 - SM_b20381 0.58 -0.6 392,918 - SM_b20381 0.58 -1.1 392,924 - SM_b20381 0.59 +0.7 392,924 - SM_b20381 0.59 +0.6 392,982 - SM_b20381 0.66 -0.2 393,130 + SM_b20381 0.84 -0.5 393,131 - SM_b20381 0.84 -4.2 393,143 + SM_b20381 0.85 -1.9 393,312 + +0.5 393,312 + +0.2 393,313 - +0.3 393,313 - +0.1 393,313 - +0.6 393,404 + SM_b20382 0.17 +0.2 393,404 + SM_b20382 0.17 -0.6 393,405 - SM_b20382 0.17 -2.8 393,459 + SM_b20382 0.23 +0.9 393,459 + SM_b20382 0.23 +0.7 393,459 + SM_b20382 0.23 +0.1 393,459 + SM_b20382 0.23 +0.1 393,460 - SM_b20382 0.23 -0.3 393,460 - SM_b20382 0.23 -0.5 393,528 + SM_b20382 0.31 -2.4 393,585 + -1.4 393,585 + SM_b20382 0.38 -1.2 393,585 + SM_b20382 0.38 -1.1 393,586 - SM_b20382 0.38 -3.6 393,586 - SM_b20382 0.38 -1.9 393,641 - SM_b20382 0.44 +1.2 393,768 + SM_b20382 0.59 -0.4 393,769 - SM_b20382 0.59 -2.3 393,769 - SM_b20382 0.59 -1.2 393,783 + SM_b20382 0.61 -0.3 393,784 - SM_b20382 0.61 -2.4 393,924 + SM_b20382 0.78 +1.3 393,924 + SM_b20382 0.78 -2.6 393,924 + SM_b20382 0.78 -0.6 393,924 + SM_b20382 0.78 +0.0 394,014 + SM_b20382 0.88 -0.3 394,015 - SM_b20382 0.88 +1.3 394,196 + +0.2 394,241 + +0.3 394,241 + -0.6 394,563 + SM_b20383 0.30 +1.3 394,564 - SM_b20383 0.30 -0.2 394,722 - SM_b20383 0.45 +1.6 394,722 - SM_b20383 0.45 -1.1 394,877 + SM_b20383 0.59 -0.8 394,878 - SM_b20383 0.59 -0.6 394,878 - SM_b20383 0.59 -2.9 395,104 + SM_b20383 0.80 +0.7 395,105 - SM_b20383 0.81 +0.9
Or see this region's nucleotide sequence