Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20372 and SM_b20373 are separated by 11 nucleotides SM_b20373 and SM_b20374 are separated by 79 nucleotides SM_b20374 and SM_b20375 are separated by 20 nucleotides SM_b20375 and SM_b20376 are separated by 203 nucleotides
SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095
_b20372
SM_b20373: SM_b20373 - TRAP dicarboxylate transporter, at 385,107 to 385,574
_b20373
SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646
_b20374
SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437
_b20375
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
Position (kb)
385
386
387 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 384.853 kb on - strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 385.003 kb on + strand at 385.003 kb on + strand at 385.003 kb on + strand at 385.004 kb on - strand at 385.004 kb on - strand at 385.034 kb on + strand at 385.259 kb on + strand, within SM_b20373 at 385.380 kb on - strand, within SM_b20373 at 385.593 kb on + strand at 385.594 kb on - strand at 385.655 kb on + strand at 386.205 kb on - strand, within SM_b20374 at 386.315 kb on + strand, within SM_b20374 at 386.517 kb on - strand, within SM_b20374 at 386.556 kb on - strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.728 kb on + strand at 386.728 kb on + strand at 386.729 kb on - strand at 386.845 kb on + strand, within SM_b20375 at 386.927 kb on - strand, within SM_b20375
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 384,853 - SM_b20372 0.81 +0.0 384,956 + SM_b20372 0.89 -0.9 384,956 + SM_b20372 0.89 -0.4 384,957 - SM_b20372 0.89 -0.4 384,957 - SM_b20372 0.89 +4.2 385,003 + -0.2 385,003 + -0.8 385,003 + +3.2 385,004 - +1.1 385,004 - -1.0 385,034 + -0.6 385,259 + SM_b20373 0.32 +0.2 385,380 - SM_b20373 0.58 +0.2 385,593 + +0.2 385,594 - +0.2 385,655 + +0.7 386,205 - SM_b20374 0.55 -1.1 386,315 + SM_b20374 0.67 +1.2 386,517 - SM_b20374 0.87 -1.6 386,556 - +0.5 386,724 + -2.0 386,724 + -0.3 386,724 + +0.3 386,725 - -2.2 386,725 - +1.3 386,725 - +0.7 386,725 - +0.7 386,725 - -0.4 386,725 - +1.2 386,725 - -1.8 386,728 + +2.1 386,728 + -1.2 386,729 - +1.2 386,845 + SM_b20375 0.23 -0.6 386,927 - SM_b20375 0.34 -0.3
Or see this region's nucleotide sequence