Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20340 and SM_b20341 are separated by 204 nucleotides SM_b20341 and SM_b20342 are separated by 386 nucleotides SM_b20342 and SM_b20343 are separated by 1 nucleotides SM_b20343 and SM_b20344 are separated by 276 nucleotides
SM_b20340: SM_b20340 - hypothetical protein, at 345,349 to 345,528
_b20340
SM_b20341: SM_b20341 - hypothetical protein, at 345,733 to 345,918
_b20341
SM_b20342: SM_b20342 - isoquinoline 1-oxidoreductase, at 346,305 to 348,518
_b20342
SM_b20343: SM_b20343 - isoquinoline 1-oxidoreductase, at 348,520 to 348,978
_b20343
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 345.496 kb on - strand, within SM_b20340 at 345.511 kb on + strand at 346.055 kb on + strand at 346.056 kb on - strand at 346.056 kb on - strand at 346.153 kb on - strand at 346.153 kb on - strand at 346.258 kb on - strand at 346.272 kb on - strand at 346.446 kb on - strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.652 kb on + strand, within SM_b20342 at 346.655 kb on + strand, within SM_b20342 at 346.655 kb on + strand, within SM_b20342 at 346.984 kb on + strand, within SM_b20342 at 347.022 kb on + strand, within SM_b20342 at 347.022 kb on + strand, within SM_b20342 at 347.023 kb on - strand, within SM_b20342 at 347.143 kb on + strand, within SM_b20342 at 347.143 kb on + strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.244 kb on + strand, within SM_b20342 at 347.245 kb on - strand, within SM_b20342 at 347.245 kb on - strand, within SM_b20342 at 347.569 kb on + strand, within SM_b20342 at 347.827 kb on + strand, within SM_b20342 at 347.828 kb on - strand at 347.828 kb on - strand, within SM_b20342 at 347.889 kb on - strand, within SM_b20342 at 348.172 kb on + strand, within SM_b20342 at 348.173 kb on - strand, within SM_b20342 at 348.182 kb on + strand, within SM_b20342 at 348.260 kb on + strand, within SM_b20342 at 348.262 kb on + strand, within SM_b20342 at 348.263 kb on - strand, within SM_b20342 at 348.513 kb on + strand at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.728 kb on - strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.940 kb on + strand at 348.941 kb on - strand at 348.966 kb on + strand at 348.966 kb on + strand at 349.127 kb on + strand at 349.128 kb on - strand at 349.153 kb on + strand at 349.154 kb on - strand at 349.154 kb on - strand at 349.177 kb on - strand at 349.196 kb on + strand at 349.197 kb on - strand at 349.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 345,496 - SM_b20340 0.82 +1.0 345,511 + -1.6 346,055 + -0.5 346,056 - -2.5 346,056 - -0.6 346,153 - -0.7 346,153 - -0.7 346,258 - -0.2 346,272 - +1.1 346,446 - -0.2 346,489 + +0.8 346,489 + +1.2 346,489 + -1.8 346,489 + -1.3 346,489 + +0.7 346,489 + -3.6 346,490 - -1.0 346,490 - +0.1 346,490 - +0.9 346,490 - -0.3 346,490 - -0.4 346,652 + SM_b20342 0.16 -2.3 346,655 + SM_b20342 0.16 -0.6 346,655 + SM_b20342 0.16 -0.5 346,984 + SM_b20342 0.31 -1.2 347,022 + SM_b20342 0.32 -2.6 347,022 + SM_b20342 0.32 -0.6 347,023 - SM_b20342 0.32 -0.1 347,143 + SM_b20342 0.38 -0.9 347,143 + SM_b20342 0.38 -0.6 347,144 - SM_b20342 0.38 -2.8 347,144 - SM_b20342 0.38 -1.2 347,144 - SM_b20342 0.38 +0.8 347,144 - SM_b20342 0.38 +0.3 347,244 + SM_b20342 0.42 +0.6 347,245 - SM_b20342 0.42 +0.3 347,245 - SM_b20342 0.42 +0.2 347,569 + SM_b20342 0.57 -2.7 347,827 + SM_b20342 0.69 -0.1 347,828 - +4.0 347,828 - SM_b20342 0.69 +2.2 347,889 - SM_b20342 0.72 +0.5 348,172 + SM_b20342 0.84 +0.5 348,173 - SM_b20342 0.84 +0.7 348,182 + SM_b20342 0.85 -0.5 348,260 + SM_b20342 0.88 -0.7 348,262 + SM_b20342 0.88 -0.6 348,263 - SM_b20342 0.88 -2.1 348,513 + -2.3 348,572 + SM_b20343 0.11 +1.1 348,572 + SM_b20343 0.11 +0.0 348,572 + SM_b20343 0.11 -0.3 348,728 - SM_b20343 0.45 -0.3 348,833 + SM_b20343 0.68 +0.0 348,833 + SM_b20343 0.68 +1.1 348,940 + -0.6 348,941 - -0.0 348,966 + -1.9 348,966 + +0.1 349,127 + -0.1 349,128 - -0.2 349,153 + -1.6 349,154 - +0.2 349,154 - -0.7 349,177 - -1.3 349,196 + -0.5 349,197 - +0.6 349,207 - -0.5
Or see this region's nucleotide sequence