Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20328

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20326 and SM_b20327 overlap by 1 nucleotidesSM_b20327 and SM_b20328 are separated by 9 nucleotidesSM_b20328 and SM_b20329 are separated by 165 nucleotidesSM_b20329 and SM_b20330 overlap by 4 nucleotides SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data), at 329,457 to 330,443 _b20326 SM_b20327: SM_b20327 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) (from data), at 330,443 to 331,273 _b20327 SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data), at 331,283 to 332,311 _b20328 SM_b20329: SM_b20329 - required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data), at 332,477 to 333,289 _b20329 SM_b20330: SM_b20330 - glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data), at 333,286 to 334,383 _b20330 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 330.399 kb on + strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.477 kb on - strandat 330.522 kb on - strandat 330.522 kb on - strandat 330.525 kb on - strandat 330.575 kb on + strand, within SM_b20327at 330.590 kb on - strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.685 kb on - strand, within SM_b20327at 330.714 kb on - strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.730 kb on - strand, within SM_b20327at 330.869 kb on + strand, within SM_b20327at 331.272 kb on - strandat 331.549 kb on + strand, within SM_b20328at 331.559 kb on + strand, within SM_b20328at 331.662 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.851 kb on - strand, within SM_b20328at 331.897 kb on - strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.143 kb on + strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.147 kb on + strand, within SM_b20328at 332.148 kb on - strand, within SM_b20328at 332.395 kb on + strandat 332.396 kb on - strandat 332.751 kb on + strand, within SM_b20329at 332.751 kb on + strand, within SM_b20329at 332.752 kb on - strand, within SM_b20329at 332.790 kb on + strand, within SM_b20329at 332.790 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 333.073 kb on + strand, within SM_b20329at 333.073 kb on + strand, within SM_b20329at 333.081 kb on - strand, within SM_b20329at 333.130 kb on - strand, within SM_b20329at 333.130 kb on - strand, within SM_b20329at 333.164 kb on + strand, within SM_b20329at 333.165 kb on - strand, within SM_b20329at 333.166 kb on + strand, within SM_b20329at 333.166 kb on + strandat 333.182 kb on + strand, within SM_b20329at 333.182 kb on + strand, within SM_b20329at 333.183 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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330,399 + -0.2
330,400 - +1.8
330,400 - +1.0
330,400 - -1.7
330,400 - +0.5
330,477 - -0.6
330,522 - -0.4
330,522 - +0.7
330,525 - -0.2
330,575 + SM_b20327 0.16 -0.3
330,590 - SM_b20327 0.18 +1.2
330,605 + SM_b20327 0.19 +0.0
330,605 + SM_b20327 0.19 +1.4
330,606 - SM_b20327 0.20 -0.0
330,606 - SM_b20327 0.20 +0.6
330,685 - SM_b20327 0.29 -0.1
330,714 - SM_b20327 0.33 -0.2
330,729 + SM_b20327 0.34 -0.3
330,729 + SM_b20327 0.34 +0.9
330,730 - SM_b20327 0.35 +0.5
330,869 + SM_b20327 0.51 -1.7
331,272 - +0.7
331,549 + SM_b20328 0.26 -1.9
331,559 + SM_b20328 0.27 -0.4
331,662 + SM_b20328 0.37 -0.5
331,850 + SM_b20328 0.55 +0.6
331,850 + SM_b20328 0.55 -0.5
331,851 - SM_b20328 0.55 +2.3
331,897 - SM_b20328 0.60 +0.7
332,033 + SM_b20328 0.73 +1.0
332,033 + SM_b20328 0.73 -3.1
332,033 + SM_b20328 0.73 -0.9
332,033 + SM_b20328 0.73 -0.4
332,033 + SM_b20328 0.73 -1.3
332,033 + SM_b20328 0.73 -2.3
332,034 - SM_b20328 0.73 -0.0
332,034 - SM_b20328 0.73 -0.3
332,034 - SM_b20328 0.73 -0.0
332,141 + SM_b20328 0.83 +0.3
332,141 + SM_b20328 0.83 -0.3
332,142 - SM_b20328 0.83 +1.3
332,142 - SM_b20328 0.83 -1.8
332,142 - SM_b20328 0.83 +2.5
332,142 - SM_b20328 0.83 -0.4
332,143 + SM_b20328 0.84 +2.2
332,144 - SM_b20328 0.84 +0.1
332,144 - SM_b20328 0.84 -0.3
332,144 - SM_b20328 0.84 -2.0
332,144 - SM_b20328 0.84 -1.3
332,144 - SM_b20328 0.84 -0.2
332,147 + SM_b20328 0.84 -2.1
332,148 - SM_b20328 0.84 -0.3
332,395 + -0.3
332,396 - +0.2
332,751 + SM_b20329 0.34 -2.7
332,751 + SM_b20329 0.34 -1.2
332,752 - SM_b20329 0.34 -1.2
332,790 + SM_b20329 0.38 +0.3
332,790 + SM_b20329 0.38 -0.4
332,963 + SM_b20329 0.60 +0.3
332,963 + SM_b20329 0.60 -1.9
332,963 + SM_b20329 0.60 +0.3
332,963 + SM_b20329 0.60 +1.3
332,964 - SM_b20329 0.60 +1.6
332,964 - SM_b20329 0.60 -0.9
332,964 - SM_b20329 0.60 +2.0
333,073 + SM_b20329 0.73 +0.4
333,073 + SM_b20329 0.73 -0.5
333,081 - SM_b20329 0.74 +0.0
333,130 - SM_b20329 0.80 +2.3
333,130 - SM_b20329 0.80 +0.8
333,164 + SM_b20329 0.85 -1.1
333,165 - SM_b20329 0.85 +0.7
333,166 + SM_b20329 0.85 +1.3
333,166 + +1.3
333,182 + SM_b20329 0.87 -1.0
333,182 + SM_b20329 0.87 +0.1
333,183 - SM_b20329 0.87 -0.3
333,185 - SM_b20329 0.87 -1.4
333,185 - SM_b20329 0.87 +1.3
333,185 - SM_b20329 0.87 -1.1

Or see this region's nucleotide sequence