Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20221 and SM_b20222 are separated by 9 nucleotides SM_b20222 and SM_b22001 are separated by 699 nucleotides
SM_b22002: SM_b22002 - epoxide hydrolase, at 228,407 to 228,829
_b22002
SM_b20221: SM_b20221 - epoxide hydrolase, at 228,706 to 229,740
_b20221
SM_b20222: SM_b20222 - hypothetical protein, at 229,750 to 230,172
_b20222
SM_b22001: SM_b22001 - hypothetical protein, at 230,872 to 231,375
_b22001
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 228.759 kb on + strand at 228.759 kb on + strand at 228.960 kb on + strand, within SM_b20221 at 228.961 kb on - strand, within SM_b20221 at 229.063 kb on + strand, within SM_b20221 at 229.356 kb on + strand, within SM_b20221 at 229.356 kb on + strand, within SM_b20221 at 229.412 kb on + strand, within SM_b20221 at 229.791 kb on + strand at 229.791 kb on + strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.793 kb on + strand, within SM_b20222 at 229.793 kb on + strand, within SM_b20222 at 229.793 kb on + strand, within SM_b20222 at 229.794 kb on - strand, within SM_b20222 at 229.794 kb on - strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 230.152 kb on - strand at 230.152 kb on - strand at 230.205 kb on + strand at 230.223 kb on + strand at 230.223 kb on + strand at 230.224 kb on - strand at 230.224 kb on - strand at 230.541 kb on + strand at 230.541 kb on + strand at 230.542 kb on - strand at 230.686 kb on + strand at 230.687 kb on - strand at 230.725 kb on + strand at 230.779 kb on + strand at 230.865 kb on - strand at 230.903 kb on + strand at 230.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 228,759 + -1.7 228,759 + -2.4 228,960 + SM_b20221 0.25 -2.6 228,961 - SM_b20221 0.25 -0.4 229,063 + SM_b20221 0.34 +1.0 229,356 + SM_b20221 0.63 -0.5 229,356 + SM_b20221 0.63 -0.1 229,412 + SM_b20221 0.68 -1.0 229,791 + +0.4 229,791 + -1.9 229,792 - +0.5 229,792 - +1.0 229,792 - -2.6 229,792 - -0.0 229,793 + SM_b20222 0.10 +0.1 229,793 + SM_b20222 0.10 -1.6 229,793 + SM_b20222 0.10 +0.3 229,794 - SM_b20222 0.10 +1.7 229,794 - SM_b20222 0.10 +4.3 229,937 + SM_b20222 0.44 +2.2 229,937 + SM_b20222 0.44 +1.3 229,937 + SM_b20222 0.44 +0.5 229,938 - SM_b20222 0.44 -2.4 229,938 - SM_b20222 0.44 +0.8 229,938 - SM_b20222 0.44 -2.0 230,152 - +1.0 230,152 - +0.6 230,205 + +0.5 230,223 + -0.4 230,223 + -3.3 230,224 - +0.8 230,224 - -0.3 230,541 + -2.3 230,541 + -0.2 230,542 - +0.3 230,686 + +1.7 230,687 - +5.1 230,725 + -1.1 230,779 + -0.1 230,865 - -2.2 230,903 + -0.0 230,903 + -1.8
Or see this region's nucleotide sequence