Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20217 and SM_b20218 are separated by 170 nucleotides SM_b20218 and SM_b20219 overlap by 1 nucleotides SM_b20219 and SM_b22002 are separated by 91 nucleotides
SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043
_b20217
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
SM_b20219: SM_b20219 - response regulator protein, at 227,578 to 228,315
_b20219
SM_b22002: SM_b22002 - epoxide hydrolase, at 228,407 to 228,829
_b22002
Position (kb)
226
227
228 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 225.259 kb on + strand at 225.259 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.278 kb on - strand at 225.419 kb on + strand at 225.419 kb on + strand at 225.435 kb on - strand at 225.545 kb on + strand, within SM_b20217 at 225.624 kb on + strand, within SM_b20217 at 225.694 kb on + strand, within SM_b20217 at 225.735 kb on + strand, within SM_b20217 at 225.736 kb on - strand, within SM_b20217 at 225.787 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 226.002 kb on + strand at 226.142 kb on - strand at 226.470 kb on - strand, within SM_b20218 at 226.470 kb on - strand, within SM_b20218 at 226.676 kb on + strand, within SM_b20218 at 226.885 kb on - strand, within SM_b20218 at 227.089 kb on - strand, within SM_b20218 at 227.135 kb on + strand, within SM_b20218 at 227.136 kb on - strand, within SM_b20218 at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.544 kb on - strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.552 kb on - strand at 227.643 kb on + strand at 227.643 kb on + strand at 227.644 kb on - strand at 227.644 kb on - strand at 227.645 kb on + strand at 227.645 kb on + strand at 227.646 kb on - strand at 227.839 kb on - strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.007 kb on - strand, within SM_b20219 at 228.009 kb on - strand, within SM_b20219 at 228.174 kb on + strand at 228.249 kb on - strand at 228.249 kb on - strand at 228.373 kb on + strand at 228.373 kb on + strand at 228.374 kb on - strand at 228.501 kb on + strand, within SM_b22002 at 228.504 kb on + strand at 228.552 kb on + strand, within SM_b22002 at 228.553 kb on - strand, within SM_b22002
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 225,259 + -0.8 225,259 + +0.4 225,277 + -1.5 225,277 + +0.3 225,277 + -0.5 225,277 + -1.1 225,277 + -0.9 225,278 - -3.6 225,419 + +0.8 225,419 + -1.0 225,435 - +0.9 225,545 + SM_b20217 0.25 +2.5 225,624 + SM_b20217 0.37 +1.1 225,694 + SM_b20217 0.47 +1.4 225,735 + SM_b20217 0.54 -0.8 225,736 - SM_b20217 0.54 -0.0 225,787 - SM_b20217 0.61 -1.2 225,796 - SM_b20217 0.63 +1.5 225,796 - SM_b20217 0.63 -0.3 226,002 + +0.5 226,142 - +0.2 226,470 - SM_b20218 0.19 -1.9 226,470 - SM_b20218 0.19 -1.3 226,676 + SM_b20218 0.34 -0.2 226,885 - SM_b20218 0.49 -0.3 227,089 - SM_b20218 0.64 -2.2 227,135 + SM_b20218 0.67 -1.2 227,136 - SM_b20218 0.68 -1.0 227,445 + +0.9 227,446 - +4.3 227,446 - -0.3 227,544 - -0.7 227,551 + +0.5 227,551 + +1.0 227,551 + +0.7 227,552 - +0.1 227,643 + +0.0 227,643 + -1.5 227,644 - +0.3 227,644 - +0.7 227,645 + +0.7 227,645 + -0.8 227,646 - -0.9 227,839 - SM_b20219 0.35 -2.4 228,006 + SM_b20219 0.58 -3.0 228,006 + SM_b20219 0.58 +1.8 228,007 - SM_b20219 0.58 -1.8 228,009 - SM_b20219 0.58 +0.5 228,174 + +1.3 228,249 - -2.4 228,249 - -0.7 228,373 + +0.6 228,373 + -0.6 228,374 - -1.8 228,501 + SM_b22002 0.22 -0.3 228,504 + +2.9 228,552 + SM_b22002 0.34 -1.0 228,553 - SM_b22002 0.35 -4.1
Or see this region's nucleotide sequence