Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20167 and SM_b20168 are separated by 134 nucleotides SM_b20168 and SM_b20169 are separated by 128 nucleotides SM_b20169 and SM_b20170 are separated by 169 nucleotides
SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234
_b20167
SM_b20168: SM_b20168 - hypothetical protein, at 186,369 to 187,466
_b20168
SM_b20169: SM_b20169 - hypothetical protein, at 187,595 to 188,236
_b20169
SM_b20170: SM_b20170 - glutathione-dependent formaldehyde dehydrogenase, at 188,406 to 189,533
_b20170
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 185.472 kb on + strand at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.663 kb on + strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.711 kb on - strand, within SM_b20167 at 186.151 kb on + strand, within SM_b20167 at 186.213 kb on + strand at 186.269 kb on - strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.280 kb on + strand at 186.280 kb on + strand at 186.280 kb on + strand at 186.281 kb on - strand at 186.281 kb on - strand at 186.281 kb on - strand at 186.319 kb on + strand at 186.320 kb on - strand at 186.354 kb on + strand at 186.550 kb on + strand, within SM_b20168 at 186.550 kb on + strand, within SM_b20168 at 186.551 kb on - strand, within SM_b20168 at 186.551 kb on - strand, within SM_b20168 at 186.716 kb on - strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.778 kb on - strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.939 kb on + strand, within SM_b20168 at 187.296 kb on + strand, within SM_b20168 at 187.465 kb on - strand at 187.512 kb on + strand at 187.674 kb on + strand, within SM_b20169 at 187.674 kb on + strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.675 kb on - strand, within SM_b20169 at 187.701 kb on + strand, within SM_b20169 at 187.882 kb on + strand, within SM_b20169 at 188.101 kb on + strand, within SM_b20169 at 188.177 kb on + strand at 188.178 kb on - strand at 188.178 kb on - strand at 188.269 kb on + strand at 188.271 kb on + strand at 188.271 kb on + strand at 188.272 kb on - strand at 188.272 kb on - strand at 188.313 kb on + strand at 188.313 kb on + strand at 188.314 kb on - strand at 188.349 kb on + strand at 188.350 kb on - strand at 188.380 kb on + strand at 188.384 kb on + strand at 188.384 kb on + strand at 188.385 kb on - strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.389 kb on + strand at 188.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 185,472 + +0.4 185,517 - SM_b20167 0.12 -1.8 185,517 - SM_b20167 0.12 +1.4 185,517 - SM_b20167 0.12 +0.8 185,517 - SM_b20167 0.12 +1.0 185,517 - SM_b20167 0.12 +0.5 185,663 + SM_b20167 0.30 +0.7 185,664 - SM_b20167 0.30 +0.3 185,664 - SM_b20167 0.30 +1.3 185,711 - SM_b20167 0.36 -0.0 186,151 + SM_b20167 0.90 -2.6 186,213 + -1.6 186,269 - +4.0 186,273 + +0.5 186,273 + -0.6 186,273 + -0.1 186,273 + +0.6 186,274 - +0.6 186,274 - -0.6 186,274 - +0.7 186,274 - +0.0 186,275 + +0.3 186,275 + -1.0 186,276 - +0.3 186,276 - +2.1 186,276 - -0.9 186,276 - +0.4 186,276 - -0.2 186,280 + +0.4 186,280 + -1.0 186,280 + +0.4 186,281 - +0.5 186,281 - -0.7 186,281 - +0.9 186,319 + -1.1 186,320 - -1.0 186,354 + -0.7 186,550 + SM_b20168 0.16 -1.8 186,550 + SM_b20168 0.16 -0.4 186,551 - SM_b20168 0.17 -0.4 186,551 - SM_b20168 0.17 -3.0 186,716 - SM_b20168 0.32 +0.7 186,777 + SM_b20168 0.37 -2.3 186,777 + SM_b20168 0.37 -1.2 186,778 - SM_b20168 0.37 -1.5 186,833 + SM_b20168 0.42 -0.3 186,833 + SM_b20168 0.42 +0.7 186,834 - SM_b20168 0.42 +0.9 186,834 - SM_b20168 0.42 +0.9 186,939 + SM_b20168 0.52 -0.5 187,296 + SM_b20168 0.84 -2.3 187,465 - -0.5 187,512 + -1.0 187,674 + SM_b20169 0.12 +1.4 187,674 + SM_b20169 0.12 -3.5 187,675 - SM_b20169 0.12 +0.8 187,675 - SM_b20169 0.12 +3.9 187,675 - SM_b20169 0.12 +0.7 187,675 - SM_b20169 0.12 -3.0 187,675 - SM_b20169 0.12 +0.3 187,675 - SM_b20169 0.12 -0.8 187,675 - SM_b20169 0.12 +0.2 187,701 + SM_b20169 0.17 +0.3 187,882 + SM_b20169 0.45 +0.3 188,101 + SM_b20169 0.79 -1.1 188,177 + -0.5 188,178 - -3.1 188,178 - +0.1 188,269 + -1.5 188,271 + -0.3 188,271 + +0.2 188,272 - -1.2 188,272 - +1.3 188,313 + +0.1 188,313 + -1.8 188,314 - +0.6 188,349 + +0.3 188,350 - +0.3 188,380 + -2.6 188,384 + -3.7 188,384 + +0.6 188,385 - -1.3 188,389 + +0.4 188,389 + +0.1 188,389 + +1.4 188,390 - +0.0
Or see this region's nucleotide sequence