Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20129

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20128 and SM_b20129 are separated by 449 nucleotidesSM_b20129 and SM_b20130 are separated by 50 nucleotidesSM_b20130 and SM_b20131 overlap by 4 nucleotides SM_b20128: SM_b20128 - deaminase, at 140,042 to 141,355 _b20128 SM_b20129: SM_b20129 - transcriptional regulator, at 141,805 to 142,584 _b20129 SM_b20130: SM_b20130 - dehydrogenase, at 142,635 to 143,498 _b20130 SM_b20131: SM_b20131 - oxidoreductase, at 143,495 to 143,980 _b20131 Position (kb) 141 142 143Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 141.030 kb on + strand, within SM_b20128at 141.031 kb on - strand, within SM_b20128at 141.331 kb on + strandat 141.331 kb on + strandat 141.401 kb on + strandat 141.401 kb on + strandat 141.402 kb on - strandat 141.402 kb on - strandat 141.402 kb on - strandat 141.438 kb on + strandat 141.838 kb on + strandat 141.995 kb on + strand, within SM_b20129at 141.995 kb on + strand, within SM_b20129at 142.097 kb on + strand, within SM_b20129at 142.097 kb on + strand, within SM_b20129at 142.098 kb on - strand, within SM_b20129at 142.210 kb on + strand, within SM_b20129at 142.211 kb on - strand, within SM_b20129at 142.447 kb on - strand, within SM_b20129at 142.651 kb on - strandat 142.651 kb on - strandat 142.653 kb on + strandat 142.653 kb on + strandat 142.653 kb on + strandat 142.818 kb on - strand, within SM_b20130at 142.821 kb on + strand, within SM_b20130at 142.821 kb on + strand, within SM_b20130at 142.821 kb on + strand, within SM_b20130at 142.942 kb on + strand, within SM_b20130at 142.943 kb on - strand, within SM_b20130at 143.046 kb on + strand, within SM_b20130at 143.140 kb on + strand, within SM_b20130at 143.578 kb on - strand, within SM_b20131

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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141,030 + SM_b20128 0.75 -2.4
141,031 - SM_b20128 0.75 +0.7
141,331 + +1.2
141,331 + -0.9
141,401 + -2.8
141,401 + -1.6
141,402 - -1.5
141,402 - +0.7
141,402 - -0.0
141,438 + +0.3
141,838 + +1.7
141,995 + SM_b20129 0.24 +1.3
141,995 + SM_b20129 0.24 -0.3
142,097 + SM_b20129 0.37 -0.9
142,097 + SM_b20129 0.37 +1.6
142,098 - SM_b20129 0.38 -0.7
142,210 + SM_b20129 0.52 +0.3
142,211 - SM_b20129 0.52 -1.7
142,447 - SM_b20129 0.82 -3.2
142,651 - -2.7
142,651 - +2.0
142,653 + -1.5
142,653 + -1.3
142,653 + -1.3
142,818 - SM_b20130 0.21 -1.8
142,821 + SM_b20130 0.22 +0.4
142,821 + SM_b20130 0.22 +0.1
142,821 + SM_b20130 0.22 -0.3
142,942 + SM_b20130 0.36 -3.3
142,943 - SM_b20130 0.36 +0.1
143,046 + SM_b20130 0.48 +1.6
143,140 + SM_b20130 0.58 +1.5
143,578 - SM_b20131 0.17 +0.2

Or see this region's nucleotide sequence