Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20105 and SM_b20106 are separated by 179 nucleotides SM_b20106 and SM_b20107 are separated by 67 nucleotides SM_b20107 and SM_b20108 are separated by 123 nucleotides
SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644
_b20105
SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555
_b20106
SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579
_b20107
SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211
_b20108
Position (kb) 117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 116.915 kb on + strand, within SM_b20106 at 116.916 kb on - strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.065 kb on - strand, within SM_b20106 at 117.065 kb on - strand, within SM_b20106 at 117.117 kb on + strand, within SM_b20106 at 117.118 kb on - strand, within SM_b20106 at 117.154 kb on + strand, within SM_b20106 at 117.155 kb on - strand, within SM_b20106 at 117.155 kb on - strand, within SM_b20106 at 117.480 kb on - strand, within SM_b20106 at 117.540 kb on + strand at 117.540 kb on + strand at 117.650 kb on + strand at 117.792 kb on - strand, within SM_b20107 at 117.792 kb on - strand, within SM_b20107 at 117.867 kb on + strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 118.037 kb on + strand, within SM_b20107 at 118.055 kb on + strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.116 kb on - strand, within SM_b20107 at 118.167 kb on + strand, within SM_b20107 at 118.168 kb on - strand, within SM_b20107 at 118.253 kb on + strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107 at 118.646 kb on - strand at 118.646 kb on - strand at 118.798 kb on - strand at 119.252 kb on + strand, within SM_b20108 at 119.252 kb on + strand, within SM_b20108 at 119.252 kb on + strand, within SM_b20108 at 119.253 kb on - strand, within SM_b20108 at 119.253 kb on - strand, within SM_b20108 at 119.306 kb on + strand, within SM_b20108 at 119.306 kb on + strand, within SM_b20108 at 119.307 kb on - strand, within SM_b20108 at 119.342 kb on + strand, within SM_b20108 at 119.342 kb on + strand, within SM_b20108 at 119.343 kb on - strand, within SM_b20108 at 119.343 kb on - strand, within SM_b20108 at 119.456 kb on + strand, within SM_b20108
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 116,915 + SM_b20106 0.12 +0.9 116,916 - SM_b20106 0.13 -0.7 117,064 + SM_b20106 0.33 -0.1 117,064 + SM_b20106 0.33 +1.1 117,064 + SM_b20106 0.33 +0.0 117,064 + SM_b20106 0.33 +0.7 117,065 - SM_b20106 0.33 +1.3 117,065 - SM_b20106 0.33 +0.5 117,117 + SM_b20106 0.40 -0.1 117,118 - SM_b20106 0.40 -1.3 117,154 + SM_b20106 0.45 -0.2 117,155 - SM_b20106 0.45 -1.1 117,155 - SM_b20106 0.45 +0.3 117,480 - SM_b20106 0.90 +0.5 117,540 + -0.6 117,540 + -0.2 117,650 + +1.4 117,792 - SM_b20107 0.18 -1.6 117,792 - SM_b20107 0.18 +0.8 117,867 + SM_b20107 0.25 -0.5 117,868 - SM_b20107 0.26 +3.0 117,868 - SM_b20107 0.26 +1.8 118,037 + SM_b20107 0.43 +0.1 118,055 + SM_b20107 0.45 +1.5 118,056 - SM_b20107 0.45 -0.5 118,056 - SM_b20107 0.45 +2.3 118,056 - SM_b20107 0.45 -1.8 118,056 - SM_b20107 0.45 +1.3 118,115 + SM_b20107 0.51 -1.9 118,115 + SM_b20107 0.51 +0.9 118,115 + SM_b20107 0.51 +1.1 118,115 + SM_b20107 0.51 -3.3 118,116 - SM_b20107 0.52 -0.2 118,167 + SM_b20107 0.57 +0.8 118,168 - SM_b20107 0.57 +0.8 118,253 + SM_b20107 0.66 +1.3 118,254 - SM_b20107 0.66 +0.2 118,254 - SM_b20107 0.66 +2.1 118,254 - SM_b20107 0.66 -1.2 118,256 - SM_b20107 0.66 -3.1 118,256 - SM_b20107 0.66 +0.9 118,303 + SM_b20107 0.71 -2.6 118,303 + SM_b20107 0.71 +0.3 118,646 - -0.5 118,646 - -0.2 118,798 - -0.1 119,252 + SM_b20108 0.36 +0.2 119,252 + SM_b20108 0.36 -0.2 119,252 + SM_b20108 0.36 +0.5 119,253 - SM_b20108 0.36 +0.7 119,253 - SM_b20108 0.36 +0.4 119,306 + SM_b20108 0.40 -0.6 119,306 + SM_b20108 0.40 +0.4 119,307 - SM_b20108 0.40 -1.0 119,342 + SM_b20108 0.42 -0.0 119,342 + SM_b20108 0.42 -1.0 119,343 - SM_b20108 0.42 +3.0 119,343 - SM_b20108 0.42 +0.5 119,456 + SM_b20108 0.50 -2.6
Or see this region's nucleotide sequence