Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b22003 and SM_b20061 are separated by 160 nucleotides SM_b20061 and SM_b20062 are separated by 103 nucleotides SM_b20062 and SM_b20063 overlap by 11 nucleotides SM_b20063 and SM_b20064 overlap by 79 nucleotides SM_b20064 and SM_b20065 are separated by 551 nucleotides
SM_b22003: SM_b22003 - hypothetical protein, at 71,778 to 72,098
_b22003
SM_b20061: SM_b20061 - hypothetical protein, at 72,259 to 72,414
_b20061
SM_b20062: SM_b20062 - hypothetical protein, at 72,518 to 72,766
_b20062
SM_b20063: SM_b20063 - hypothetical protein, at 72,756 to 73,052
_b20063
SM_b20064: SM_b20064 - hypothetical protein, at 72,974 to 73,420
_b20064
SM_b20065: SM_b20065 - hypothetical protein, at 73,972 to 74,370
_b20065
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.756 kb on - strand at 71.756 kb on - strand at 71.792 kb on + strand at 71.792 kb on + strand at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.812 kb on - strand, within SM_b22003 at 71.881 kb on + strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.950 kb on + strand, within SM_b22003 at 71.988 kb on + strand, within SM_b22003 at 71.989 kb on - strand, within SM_b22003 at 72.103 kb on - strand at 72.103 kb on - strand at 72.108 kb on + strand at 72.151 kb on + strand at 72.152 kb on - strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.219 kb on - strand at 72.271 kb on + strand at 72.271 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.444 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.539 kb on - strand at 72.539 kb on - strand at 72.660 kb on + strand, within SM_b20062 at 72.823 kb on - strand, within SM_b20063 at 72.877 kb on - strand, within SM_b20063 at 72.877 kb on - strand, within SM_b20063 at 72.877 kb on - strand, within SM_b20063 at 72.877 kb on - strand, within SM_b20063 at 72.878 kb on + strand, within SM_b20063 at 72.879 kb on - strand, within SM_b20063 at 72.952 kb on - strand, within SM_b20063 at 73.094 kb on - strand, within SM_b20064 at 73.102 kb on + strand, within SM_b20064 at 73.102 kb on + strand, within SM_b20064 at 73.103 kb on - strand, within SM_b20064 at 73.116 kb on + strand, within SM_b20064 at 73.117 kb on - strand, within SM_b20064 at 73.117 kb on - strand, within SM_b20064 at 73.205 kb on + strand, within SM_b20064 at 73.206 kb on - strand, within SM_b20064 at 73.207 kb on + strand, within SM_b20064 at 73.208 kb on - strand, within SM_b20064 at 73.208 kb on - strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.270 kb on + strand, within SM_b20064 at 73.271 kb on - strand, within SM_b20064 at 73.271 kb on - strand, within SM_b20064 at 73.272 kb on + strand, within SM_b20064 at 73.650 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.752 kb on + strand at 73.753 kb on - strand at 73.757 kb on - strand at 73.849 kb on + strand at 73.971 kb on + strand at 73.971 kb on + strand at 73.972 kb on - strand at 73.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 71,756 - -0.7 71,756 - -1.9 71,792 + +0.6 71,792 + -1.7 71,811 + SM_b22003 0.10 +0.1 71,811 + SM_b22003 0.10 -0.3 71,811 + SM_b22003 0.10 -0.2 71,812 - SM_b22003 0.11 +0.6 71,881 + SM_b22003 0.32 +0.9 71,882 - SM_b22003 0.32 -0.2 71,882 - SM_b22003 0.32 +0.3 71,882 - SM_b22003 0.32 -0.9 71,882 - SM_b22003 0.32 -0.3 71,950 + SM_b22003 0.54 +0.3 71,988 + SM_b22003 0.65 -2.6 71,989 - SM_b22003 0.66 -0.7 72,103 - +0.9 72,103 - +1.0 72,108 + -1.1 72,151 + -1.1 72,152 - -1.3 72,218 + -0.6 72,218 + +0.3 72,218 + -1.9 72,218 + -0.4 72,218 + +1.3 72,219 - -2.7 72,271 + -3.2 72,271 + -0.0 72,432 + -1.3 72,432 + -1.3 72,432 + +0.0 72,432 + +0.9 72,432 + -0.9 72,432 + +0.6 72,444 - +1.3 72,512 - -0.3 72,512 - -1.7 72,512 - -1.0 72,512 - -2.9 72,539 - +0.4 72,539 - +0.8 72,660 + SM_b20062 0.57 +2.2 72,823 - SM_b20063 0.23 -1.3 72,877 - SM_b20063 0.41 +0.2 72,877 - SM_b20063 0.41 +0.4 72,877 - SM_b20063 0.41 -0.5 72,877 - SM_b20063 0.41 -2.2 72,878 + SM_b20063 0.41 -0.5 72,879 - SM_b20063 0.41 -0.4 72,952 - SM_b20063 0.66 -2.2 73,094 - SM_b20064 0.27 -0.4 73,102 + SM_b20064 0.29 -0.1 73,102 + SM_b20064 0.29 +0.8 73,103 - SM_b20064 0.29 +1.5 73,116 + SM_b20064 0.32 -0.8 73,117 - SM_b20064 0.32 -0.7 73,117 - SM_b20064 0.32 -0.2 73,205 + SM_b20064 0.52 +0.0 73,206 - SM_b20064 0.52 -0.8 73,207 + SM_b20064 0.52 -0.5 73,208 - SM_b20064 0.52 +1.3 73,208 - SM_b20064 0.52 +0.2 73,270 + SM_b20064 0.66 +0.4 73,270 + SM_b20064 0.66 -1.2 73,270 + SM_b20064 0.66 +0.5 73,271 - SM_b20064 0.66 +0.8 73,271 - SM_b20064 0.66 +0.1 73,272 + SM_b20064 0.67 -0.9 73,650 + -3.6 73,752 + +0.7 73,752 + +1.6 73,752 + +2.5 73,752 + -0.6 73,752 + +0.2 73,753 - -0.3 73,757 - +0.3 73,849 + -0.7 73,971 + +1.3 73,971 + +0.0 73,972 - -0.6 73,972 - -0.8
Or see this region's nucleotide sequence