Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20029

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20028 and SM_b20029 are separated by 439 nucleotidesSM_b20029 and SM_b20030 overlap by 1 nucleotidesSM_b20030 and SM_b20031 are separated by 25 nucleotides SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510 _b20028 SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423 _b20029 SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280 _b20030 SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554 _b20031 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.953 kb on + strand, within SM_b20028at 39.953 kb on + strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.068 kb on + strand, within SM_b20028at 40.069 kb on - strand, within SM_b20028at 40.150 kb on - strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.174 kb on - strand, within SM_b20028at 40.239 kb on + strand, within SM_b20028at 40.345 kb on + strand, within SM_b20028at 40.346 kb on - strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.347 kb on + strand, within SM_b20028at 40.348 kb on - strand, within SM_b20028at 40.510 kb on + strandat 40.510 kb on + strandat 40.510 kb on + strandat 40.510 kb on + strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.511 kb on - strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.512 kb on + strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.513 kb on - strandat 40.514 kb on + strandat 40.515 kb on - strandat 40.515 kb on - strandat 40.528 kb on + strandat 40.547 kb on + strandat 40.547 kb on + strandat 40.548 kb on - strandat 40.548 kb on - strandat 40.565 kb on + strandat 40.565 kb on + strandat 40.566 kb on - strandat 40.597 kb on + strandat 40.598 kb on - strandat 40.598 kb on - strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.801 kb on + strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 40.802 kb on - strandat 41.048 kb on + strand, within SM_b20029at 41.154 kb on + strand, within SM_b20029at 41.154 kb on + strand, within SM_b20029at 41.155 kb on - strand, within SM_b20029at 41.155 kb on - strand, within SM_b20029at 41.188 kb on - strand, within SM_b20029at 41.268 kb on + strand, within SM_b20029at 41.330 kb on + strand, within SM_b20029at 41.531 kb on - strand, within SM_b20030at 41.614 kb on - strand, within SM_b20030at 41.666 kb on + strand, within SM_b20030at 41.666 kb on + strand, within SM_b20030at 41.666 kb on + strand, within SM_b20030at 41.666 kb on + strand, within SM_b20030at 41.667 kb on - strand, within SM_b20030at 41.667 kb on - strand, within SM_b20030at 42.239 kb on + strandat 42.239 kb on + strandat 42.307 kb on + strandat 42.372 kb on - strand, within SM_b20031at 42.372 kb on - strand, within SM_b20031at 42.372 kb on - strand, within SM_b20031at 42.372 kb on - strand, within SM_b20031

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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39,953 + SM_b20028 0.51 -1.7
39,953 + SM_b20028 0.51 -0.5
40,020 - SM_b20028 0.57 -2.2
40,020 - SM_b20028 0.57 -0.2
40,068 + SM_b20028 0.61 -0.1
40,069 - SM_b20028 0.61 -0.1
40,150 - SM_b20028 0.68 +2.3
40,173 + SM_b20028 0.70 -1.0
40,173 + SM_b20028 0.70 -0.3
40,174 - SM_b20028 0.70 +0.1
40,239 + SM_b20028 0.76 -0.3
40,345 + SM_b20028 0.85 -2.4
40,346 - SM_b20028 0.85 +1.1
40,347 + SM_b20028 0.86 -0.2
40,347 + SM_b20028 0.86 +1.0
40,347 + SM_b20028 0.86 -2.9
40,347 + SM_b20028 0.86 +0.9
40,348 - SM_b20028 0.86 -1.0
40,510 + -0.7
40,510 + +0.4
40,510 + -1.2
40,510 + -2.4
40,511 - -0.1
40,511 - -1.4
40,511 - -1.4
40,511 - +0.2
40,511 - +0.1
40,512 + -0.7
40,512 + -1.2
40,512 + -1.0
40,512 + -0.2
40,512 + -1.0
40,512 + +0.8
40,512 + +0.2
40,513 - -1.8
40,513 - -0.8
40,513 - +0.4
40,513 - -0.5
40,513 - +0.4
40,513 - -0.7
40,514 + -0.9
40,515 - +0.1
40,515 - -1.4
40,528 + +0.4
40,547 + -2.7
40,547 + +0.0
40,548 - +0.6
40,548 - +1.3
40,565 + -0.3
40,565 + -0.3
40,566 - -1.9
40,597 + -2.2
40,598 - +0.3
40,598 - -2.6
40,801 + +1.0
40,801 + +1.3
40,801 + -0.2
40,801 + +1.1
40,801 + -0.6
40,802 - +0.9
40,802 - -0.5
40,802 - -0.7
40,802 - -0.8
40,802 - +1.0
41,048 + SM_b20029 0.21 +0.2
41,154 + SM_b20029 0.43 +0.2
41,154 + SM_b20029 0.43 +2.7
41,155 - SM_b20029 0.43 -0.2
41,155 - SM_b20029 0.43 -0.0
41,188 - SM_b20029 0.50 -2.6
41,268 + SM_b20029 0.67 -3.3
41,330 + SM_b20029 0.80 -2.7
41,531 - SM_b20030 0.13 -0.8
41,614 - SM_b20030 0.22 -0.3
41,666 + SM_b20030 0.28 +0.2
41,666 + SM_b20030 0.28 -0.6
41,666 + SM_b20030 0.28 -1.5
41,666 + SM_b20030 0.28 +2.6
41,667 - SM_b20030 0.28 -1.0
41,667 - SM_b20030 0.28 -0.3
42,239 + -0.2
42,239 + +0.5
42,307 + -0.7
42,372 - SM_b20031 0.27 -1.0
42,372 - SM_b20031 0.27 -0.3
42,372 - SM_b20031 0.27 +1.3
42,372 - SM_b20031 0.27 -0.4

Or see this region's nucleotide sequence