Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20025

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20024 and SM_b20025 are separated by 249 nucleotidesSM_b20025 and SM_b20026 are separated by 206 nucleotidesSM_b20026 and SM_b20027 are separated by 12 nucleotides SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897 _b20024 SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124 _b20025 SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792 _b20026 SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310 _b20027 Position (kb) 36 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 35.365 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.872 kb on - strandat 36.023 kb on + strandat 36.063 kb on - strandat 36.405 kb on + strand, within SM_b20025at 36.406 kb on - strand, within SM_b20025at 36.492 kb on + strand, within SM_b20025at 36.493 kb on - strand, within SM_b20025at 36.693 kb on + strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.804 kb on + strand, within SM_b20025at 36.906 kb on + strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 37.113 kb on + strandat 37.742 kb on + strand, within SM_b20026at 37.742 kb on + strand, within SM_b20026at 37.791 kb on - strandat 37.791 kb on - strandat 37.791 kb on - strandat 37.884 kb on + strandat 37.885 kb on - strandat 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.054 kb on - strand, within SM_b20027

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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35,365 - SM_b20024 0.45 +1.3
35,576 - SM_b20024 0.67 -2.9
35,576 - SM_b20024 0.67 +1.8
35,578 - SM_b20024 0.67 -2.2
35,578 - SM_b20024 0.67 +0.5
35,578 - SM_b20024 0.67 +0.7
35,578 - SM_b20024 0.67 -1.7
35,578 - SM_b20024 0.67 +0.9
35,872 - +1.5
36,023 + -0.2
36,063 - -2.2
36,405 + SM_b20025 0.26 -0.0
36,406 - SM_b20025 0.26 +1.0
36,492 + SM_b20025 0.35 -1.1
36,493 - SM_b20025 0.35 -0.8
36,693 + SM_b20025 0.56 +0.1
36,694 - SM_b20025 0.56 -0.7
36,694 - SM_b20025 0.56 +0.3
36,804 + SM_b20025 0.67 -0.2
36,906 + SM_b20025 0.78 +1.3
36,907 - SM_b20025 0.78 +0.5
36,907 - SM_b20025 0.78 -0.2
37,113 + -1.2
37,742 + SM_b20026 0.89 -0.7
37,742 + SM_b20026 0.89 -3.9
37,791 - -1.1
37,791 - -1.2
37,791 - +0.3
37,884 + -2.0
37,885 - +0.0
38,006 + SM_b20027 0.13 +0.3
38,006 + SM_b20027 0.13 -0.2
38,006 + SM_b20027 0.13 +0.5
38,006 + SM_b20027 0.13 +2.2
38,007 - SM_b20027 0.13 +2.5
38,007 - SM_b20027 0.13 -0.1
38,010 - SM_b20027 0.14 +1.0
38,010 - SM_b20027 0.14 -0.7
38,053 + SM_b20027 0.16 +1.2
38,053 + SM_b20027 0.16 +0.1
38,053 + SM_b20027 0.16 +1.8
38,054 - SM_b20027 0.17 +0.1

Or see this region's nucleotide sequence