Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20395

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,602,239	-		PFLU_RS20385	0.55	+1.4
4,602,302	+		PFLU_RS20385	0.61	+1.9
4,602,392	+		PFLU_RS20385	0.69	-1.4
4,602,422	+		PFLU_RS20385	0.72	+0.4
4,602,423	-		PFLU_RS20385	0.72	+1.1
4,602,423	-		PFLU_RS20385	0.72	-1.5
4,602,534	+		PFLU_RS20385	0.82	-0.3
4,602,534	+		PFLU_RS20385	0.82	+1.8
4,602,534	+		PFLU_RS20385	0.82	+0.1
4,602,534	+		PFLU_RS20385	0.82	-0.3
4,602,534	+		PFLU_RS20385	0.82	+0.1
4,602,534	+		PFLU_RS20385	0.82	+0.6
4,602,534	+		PFLU_RS20385	0.82	-0.4
4,602,534	+		PFLU_RS20385	0.82	+0.3
4,602,534	+		PFLU_RS20385	0.82	+1.0
4,602,534	+		PFLU_RS20385	0.82	-0.4
4,602,535	-		PFLU_RS20385	0.83	+0.6
4,602,535	-		PFLU_RS20385	0.83	+0.2
4,602,535	-		PFLU_RS20385	0.83	-0.3
4,602,535	-		PFLU_RS20385	0.83	+0.3
4,602,535	-		PFLU_RS20385	0.83	-1.2
4,602,535	-		PFLU_RS20385	0.83	-0.4
4,602,535	-		PFLU_RS20385	0.83	-0.9
4,602,535	-		PFLU_RS20385	0.83	-0.3
4,602,535	-		PFLU_RS20385	0.83	-0.7
4,602,576	+		PFLU_RS20385	0.86	+0.1
4,602,576	+		PFLU_RS20385	0.86	-0.2
4,602,576	+		PFLU_RS20385	0.86	-1.3
4,602,576	+		PFLU_RS20385	0.86	-0.7
4,602,576	+		PFLU_RS20385	0.86	-1.2
4,602,576	+		PFLU_RS20385	0.86	-0.1
4,602,576	+		PFLU_RS20385	0.86	+0.6
4,602,576	+		PFLU_RS20385	0.86	+0.6
4,602,577	-		PFLU_RS20385	0.86	+3.3
4,602,577	-		PFLU_RS20385	0.86	+0.7
4,602,577	-		PFLU_RS20385	0.86	+0.8
4,602,577	-		PFLU_RS20385	0.86	+1.9
4,602,608	+		PFLU_RS20385	0.89	+0.5
4,602,608	+		PFLU_RS20385	0.89	+0.7
4,602,608	+		PFLU_RS20385	0.89	-1.7
4,602,608	+		PFLU_RS20385	0.89	-1.6
4,602,608	+		PFLU_RS20385	0.89	-0.2
4,602,608	+		PFLU_RS20385	0.89	+0.7
4,602,608	+		PFLU_RS20385	0.89	-1.2
4,602,608	+		PFLU_RS20385	0.89	+0.8
4,602,609	-		PFLU_RS20385	0.89	-0.4
4,602,609	-		PFLU_RS20385	0.89	-2.4
4,602,609	-		PFLU_RS20385	0.89	+0.0
4,602,609	-		PFLU_RS20385	0.89	-2.7
4,602,609	-		PFLU_RS20385	0.89	-1.2
4,602,609	-		PFLU_RS20385	0.89	-0.4
4,602,609	-		PFLU_RS20385	0.89	+0.9
4,602,609	-		PFLU_RS20385	0.89	+1.2
4,602,654	+				-1.3
4,602,719	+				-0.3
4,602,787	+				-0.1
4,602,787	+				-1.7
4,602,787	+				-0.2
4,602,787	+				+1.5
4,602,787	+				-0.3
4,602,787	+				-0.0
4,602,787	+				-2.9
4,602,787	+				-0.1
4,602,787	+				-0.1
4,602,787	+				-2.0
4,602,787	+				-0.6
4,602,787	+				+0.7
4,602,787	+				+0.1
4,602,787	+				+1.0
4,602,787	+				+0.7
4,602,788	-				+0.8
4,602,788	-				-1.7
4,602,788	-				+1.0
4,602,788	-				+1.1
4,602,788	-				-1.4
4,602,788	-				+1.1
4,602,788	-				-0.6
4,602,788	-				+0.3
4,602,788	-				-0.6
4,602,788	-				+1.4
4,602,788	-				-1.0
4,602,788	-				-0.0
4,602,788	-				+0.9
4,602,788	-				+0.1
4,602,791	+				+0.9
4,602,791	+				-3.0
4,602,791	+				-1.2
4,602,791	+				+0.1
4,602,791	+				-0.7
4,602,791	+				+1.3
4,602,791	+				-1.3
4,602,791	+				+0.6
4,602,791	+				-1.0
4,602,791	+				+3.1
4,602,791	+				+0.9
4,602,791	+				-2.2
4,602,791	+				-0.9
4,602,791	+				-0.3
4,602,791	+				+0.1
4,602,791	+				-0.4
4,602,791	+				+0.5
4,602,791	+				+0.1
4,602,791	+				-0.9
4,602,792	-				+0.1
4,602,792	-				+1.9
4,602,792	-				+0.9
4,602,792	-				-0.6
4,602,792	-				-0.0
4,602,792	-				-0.2
4,602,792	-				+0.1
4,602,792	-				+0.8
4,602,792	-				-0.0
4,602,792	-				+0.2
4,602,792	-				+1.1
4,602,792	-				+1.1
4,602,792	-				-0.9
4,602,792	-				-0.9
4,602,792	-				+0.0
4,602,792	-				+0.9
4,602,792	-				+1.0
4,602,792	-				-0.4
4,602,792	-				-0.5
4,602,792	-				+0.1
4,602,792	-				+0.6
4,602,792	-				-1.2
4,602,804	+				+0.1
4,602,805	-				+1.1
4,602,808	+				-2.7
4,602,808	+				-0.0
4,602,808	+				-0.3
4,602,808	+				+1.1
4,602,808	+				+1.6
4,602,808	+				-1.2
4,602,808	+				+0.9
4,602,809	-				+0.8
4,602,809	-				+2.0
4,602,809	-				+0.4
4,602,809	-				-0.4
4,602,809	-				+0.7
4,602,809	-				-0.7
4,602,809	-				+0.4
4,602,850	-				-1.1
4,602,869	+				-0.6
4,602,876	-				+0.5
4,602,880	-				+0.7
4,602,884	+				+0.6
4,602,885	-				+0.9
4,602,885	-				-0.7
4,602,957	+		PFLU_RS20390	0.17	+0.1
4,602,957	+		PFLU_RS20390	0.17	+0.6
4,602,957	+		PFLU_RS20390	0.17	+0.7
4,602,958	-		PFLU_RS20390	0.17	+0.1
4,602,958	-		PFLU_RS20390	0.17	-0.9
4,603,150	+				-0.5
4,603,150	+				-0.6
4,603,151	-				-0.5
4,603,151	-				-0.4
4,603,277	-		PFLU_RS20395	0.15	-1.6
4,603,277	-		PFLU_RS20395	0.15	+0.6
4,603,300	+		PFLU_RS20395	0.19	+0.9
4,603,300	+		PFLU_RS20395	0.19	+0.9
4,603,300	+		PFLU_RS20395	0.19	+1.5
4,603,300	+		PFLU_RS20395	0.19	-1.4
4,603,300	+		PFLU_RS20395	0.19	+0.6
4,603,301	-		PFLU_RS20395	0.19	+0.4
4,603,301	-		PFLU_RS20395	0.19	-0.6
4,603,301	-		PFLU_RS20395	0.19	+1.1
4,603,301	-		PFLU_RS20395	0.19	-0.4
4,603,301	-		PFLU_RS20395	0.19	-0.1
4,603,311	+		PFLU_RS20395	0.20	+0.6
4,603,311	+		PFLU_RS20395	0.20	+0.4
4,603,311	+		PFLU_RS20395	0.20	+1.7
4,603,311	+		PFLU_RS20395	0.20	-2.0
4,603,311	+		PFLU_RS20395	0.20	-1.4
4,603,311	+		PFLU_RS20395	0.20	-0.2
4,603,312	-		PFLU_RS20395	0.20	+1.4
4,603,312	-		PFLU_RS20395	0.20	-0.0
4,603,312	-		PFLU_RS20395	0.20	-0.2
4,603,312	-		PFLU_RS20395	0.20	+1.0
4,603,315	+		PFLU_RS20395	0.21	-0.3
4,603,315	+		PFLU_RS20395	0.21	+0.9
4,603,315	+		PFLU_RS20395	0.21	-0.2
4,603,315	+		PFLU_RS20395	0.21	-0.6
4,603,316	-		PFLU_RS20395	0.21	+0.6
4,603,316	-		PFLU_RS20395	0.21	-0.0
4,603,316	-		PFLU_RS20395	0.21	-0.4
4,603,316	-		PFLU_RS20395	0.21	+0.9
4,603,351	+		PFLU_RS20395	0.26	+1.1
4,603,351	+		PFLU_RS20395	0.26	-0.0
4,603,352	-		PFLU_RS20395	0.26	-0.9
4,603,352	-		PFLU_RS20395	0.26	+0.6
4,603,352	-		PFLU_RS20395	0.26	+2.5
4,603,401	+		PFLU_RS20395	0.33	-0.7
4,603,402	-		PFLU_RS20395	0.33	+0.7
4,603,402	-		PFLU_RS20395	0.33	+2.1
4,603,402	-		PFLU_RS20395	0.33	-0.7
4,603,552	-		PFLU_RS20395	0.55	+2.1
4,603,594	+		PFLU_RS20395	0.61	+0.4
4,603,594	+		PFLU_RS20395	0.61	+0.7
4,603,595	-		PFLU_RS20395	0.61	+0.2
4,603,595	-		PFLU_RS20395	0.61	+0.1
4,603,595	-		PFLU_RS20395	0.61	-0.1
4,603,638	+		PFLU_RS20395	0.68	-0.1
4,603,638	+		PFLU_RS20395	0.68	+0.3
4,603,638	+		PFLU_RS20395	0.68	+0.3
4,603,638	+		PFLU_RS20395	0.68	-0.8
4,603,638	+		PFLU_RS20395	0.68	-0.1
4,603,678	+		PFLU_RS20395	0.73	+2.0
4,603,678	+		PFLU_RS20395	0.73	-0.2
4,603,678	+		PFLU_RS20395	0.73	+0.6
4,603,678	+		PFLU_RS20395	0.73	+1.0
4,603,678	+		PFLU_RS20395	0.73	+0.9
4,603,678	+		PFLU_RS20395	0.73	-0.1
4,603,678	+		PFLU_RS20395	0.73	-1.4
4,603,678	+		PFLU_RS20395	0.73	+0.4
4,603,678	+		PFLU_RS20395	0.73	-0.1
4,603,678	+		PFLU_RS20395	0.73	-0.5
4,603,679	-		PFLU_RS20395	0.74	-0.4
4,603,679	-		PFLU_RS20395	0.74	+0.7
4,603,679	-		PFLU_RS20395	0.74	-0.4
4,603,679	-		PFLU_RS20395	0.74	+0.8
4,603,679	-		PFLU_RS20395	0.74	+0.5
4,603,679	-		PFLU_RS20395	0.74	+0.8
4,603,684	+		PFLU_RS20395	0.74	+1.1
4,603,684	+		PFLU_RS20395	0.74	-0.1
4,603,684	+		PFLU_RS20395	0.74	+2.1
4,603,684	+		PFLU_RS20395	0.74	+2.0
4,603,684	+		PFLU_RS20395	0.74	+0.9
4,603,684	+		PFLU_RS20395	0.74	+0.3
4,603,684	+		PFLU_RS20395	0.74	+0.1
4,603,684	+		PFLU_RS20395	0.74	-0.3
4,603,684	+		PFLU_RS20395	0.74	+1.1
4,603,684	+		PFLU_RS20395	0.74	+1.1
4,603,685	-		PFLU_RS20395	0.74	-0.0
4,603,685	-		PFLU_RS20395	0.74	+0.8
4,603,685	-		PFLU_RS20395	0.74	-0.9
4,603,685	-		PFLU_RS20395	0.74	+0.5
4,603,685	-		PFLU_RS20395	0.74	-1.6
4,603,685	-		PFLU_RS20395	0.74	-1.4
4,603,685	-		PFLU_RS20395	0.74	-0.4
4,603,685	-		PFLU_RS20395	0.74	-0.7
4,603,685	-		PFLU_RS20395	0.74	+0.1
4,603,700	-		PFLU_RS20395	0.77	+0.7
4,603,735	+		PFLU_RS20395	0.82	+0.1
4,603,735	+		PFLU_RS20395	0.82	-0.1
4,603,735	+		PFLU_RS20395	0.82	-0.5
4,603,735	+		PFLU_RS20395	0.82	-1.4
4,603,735	+		PFLU_RS20395	0.82	+2.1
4,603,735	+		PFLU_RS20395	0.82	-1.0
4,603,736	-		PFLU_RS20395	0.82	-0.4
4,603,736	-		PFLU_RS20395	0.82	+0.3
4,603,736	-		PFLU_RS20395	0.82	+2.0
4,603,736	-		PFLU_RS20395	0.82	+0.5
4,603,736	-		PFLU_RS20395	0.82	+0.3
4,603,757	-		PFLU_RS20395	0.85	+1.1
4,603,757	-		PFLU_RS20395	0.85	-0.9
4,603,893	+				+1.5
4,603,894	-				-0.4
4,603,906	+				-1.5
4,603,906	+				-0.4
4,603,907	-				-0.9
4,603,907	-				-0.6
4,603,907	-				-1.0
4,603,907	-				-1.9
4,603,907	-				+0.8
4,603,907	-				-0.3
4,604,049	+		PFLU_RS20400	0.43	+0.3
4,604,049	+		PFLU_RS20400	0.43	+0.5
4,604,050	-		PFLU_RS20400	0.43	-0.9
4,604,050	-		PFLU_RS20400	0.43	+0.6
4,604,050	-		PFLU_RS20400	0.43	+0.8
4,604,050	-		PFLU_RS20400	0.43	+0.6
4,604,102	+		PFLU_RS20400	0.57	+0.1
4,604,102	+		PFLU_RS20400	0.57	+0.2
4,604,102	+		PFLU_RS20400	0.57	+0.6
4,604,102	+		PFLU_RS20400	0.57	+0.6
4,604,261	+				+0.4
4,604,261	+				+0.8
4,604,261	+				+0.2
4,604,262	-				-2.2
4,604,266	+				+2.1
4,604,266	+				+0.5
4,604,266	+				+0.3
4,604,266	+				+2.0
4,604,267	-				+0.4
4,604,267	-				+0.9
4,604,285	+				-0.7
4,604,285	+				+0.0
4,604,285	+				+1.3
4,604,285	+				-0.0
4,604,286	-				+2.1
4,604,286	-				+0.0
4,604,306	+				-0.7
4,604,321	-				-0.4
4,604,321	-				+0.1
4,604,334	+				-0.3
4,604,334	+				+1.3
4,604,346	+				+1.0
4,604,346	+				-0.1
4,604,347	-				-1.3
4,604,364	+				-1.9
4,604,364	+				+0.6
4,604,364	+				-1.6
4,604,365	-				-1.6
4,604,365	-				-0.2
4,604,365	-				-1.0
4,604,365	-				+0.5
4,604,365	-				+0.7
4,604,377	+				+0.5
4,604,377	+				+0.8
4,604,377	+				+0.9
4,604,377	+				+1.5
4,604,377	+				+0.1
4,604,377	+				+1.0
4,604,377	+				+0.4
4,604,378	-				+0.1
4,604,378	-				-1.4
4,604,378	-				+1.5
4,604,378	-				+0.6
4,604,378	-				+0.5
4,604,378	-				+0.7
4,604,378	-				+1.5
4,604,378	-				-0.2
4,604,378	-				-0.4
4,604,378	-				-3.0
4,604,378	-				-1.6
4,604,378	-				+0.6
4,604,378	-				+0.1
4,604,378	-				-1.4
4,604,378	-				-0.1
4,604,378	-				-1.5
4,604,378	-				-1.2
4,604,397	+				+0.7
4,604,397	+				+0.5
4,604,397	+				+0.8
4,604,397	+				+0.2
4,604,397	+				+0.0
4,604,397	+				+1.4
4,604,398	-				-0.6
4,604,398	-				-0.7
4,604,398	-				-0.2
4,604,409	+				-1.8
4,604,409	+				+0.0
4,604,409	+				-0.3
4,604,409	+				+0.9
4,604,409	+				-0.4
4,604,409	+				+0.1
4,604,409	+				+1.6
4,604,410	-				+0.7
4,604,410	-				+0.7
4,604,410	-				-2.2
4,604,410	-				-1.2
4,604,410	-				+0.5
4,604,445	+				+0.2
4,604,446	-				+0.9
4,604,446	-				+1.3
4,604,451	+				+0.9
4,604,451	+				+1.3
4,604,451	+				-0.7
4,604,451	+				+0.4
4,604,451	+				+1.0
4,604,452	-				+0.5
4,604,452	-				+0.7
4,604,452	-				-0.9
4,604,452	-				+0.1
4,604,452	-				+0.6
4,604,456	+				+1.0
4,604,456	+				+0.9
4,604,456	+				-1.6
4,604,456	+				-0.4
4,604,456	+				+0.7
4,604,457	-				+0.5
4,604,457	-				-0.6
4,604,457	-				-0.3
4,604,457	-				+0.8
4,604,457	-				+1.3
4,604,457	-				+0.6
4,604,457	-				+0.6
4,604,457	-				+0.6
4,604,457	-				-1.7
4,604,457	-				+0.7
4,604,457	-				-1.2
4,604,457	-				-0.1
4,604,457	-				+0.7
4,604,497	+				+0.6
4,604,497	+				+0.6
4,604,498	-				+0.1
4,604,498	-				+2.7
4,604,503	+				-0.9
4,604,503	+				+0.1
4,604,525	+				-0.9
4,604,525	+				-0.9
4,604,525	+				+0.7
4,604,525	+				-0.9
4,604,525	+				+2.0
4,604,525	+				+0.8
4,604,525	+				-1.0
4,604,525	+				+1.0
4,604,525	+				-0.7
4,604,525	+				-0.2
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4,604,525	+				-1.4
4,604,525	+				-0.4
4,604,525	+				-0.0
4,604,525	+				+0.3
4,604,525	+				+0.7
4,604,525	+				-1.9
4,604,525	+				+0.2
4,604,525	+				-1.9
4,604,526	-				-0.1
4,604,526	-				+1.4
4,604,526	-				+0.8
4,604,526	-				-0.2
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4,604,526	-				+0.8
4,604,526	-				+1.5
4,604,526	-				-1.3
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4,604,527	+				+1.4
4,604,527	+				-0.9
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4,604,554	+		PFLU_RS20405	0.17	+1.5
4,604,554	+		PFLU_RS20405	0.17	+0.1
4,604,554	+		PFLU_RS20405	0.17	-1.2
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4,604,555	-		PFLU_RS20405	0.18	-0.4
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4,604,609	-		PFLU_RS20405	0.46	-0.2
4,604,609	-		PFLU_RS20405	0.46	-1.6
4,604,661	+		PFLU_RS20405	0.72	+0.9
4,604,661	+		PFLU_RS20405	0.72	+0.7
4,604,661	+		PFLU_RS20405	0.72	-0.3
4,604,661	+		PFLU_RS20405	0.72	-1.7
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4,604,662	-		PFLU_RS20405	0.73	-0.0
4,604,662	-		PFLU_RS20405	0.73	+0.1
4,604,662	-		PFLU_RS20405	0.73	-0.1
4,604,662	-		PFLU_RS20405	0.73	+0.3
4,604,662	-		PFLU_RS20405	0.73	-0.0
4,604,726	+				-0.4
4,604,726	+				+0.4