Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19680

Experiment: sodium fluoride 60 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS19670 and ABZR86_RS19675 are separated by 140 nucleotidesABZR86_RS19675 and ABZR86_RS19680 are separated by 81 nucleotidesABZR86_RS19680 and ABZR86_RS19685 are separated by 306 nucleotides ABZR86_RS19670: ABZR86_RS19670 - M13 family metallopeptidase, at 414,758 to 416,812 _RS19670 ABZR86_RS19675: ABZR86_RS19675 - TetR/AcrR family transcriptional regulator, at 416,953 to 417,555 _RS19675 ABZR86_RS19680: ABZR86_RS19680 - NADP-dependent oxidoreductase, at 417,637 to 418,668 _RS19680 ABZR86_RS19685: ABZR86_RS19685 - serine hydrolase domain-containing protein, at 418,975 to 420,330 _RS19685 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1at 416.858 kb on + strandat 416.859 kb on - strandat 417.091 kb on + strand, within ABZR86_RS19675at 417.091 kb on + strand, within ABZR86_RS19675at 417.091 kb on + strand, within ABZR86_RS19675at 417.092 kb on - strand, within ABZR86_RS19675at 417.092 kb on - strand, within ABZR86_RS19675at 417.092 kb on - strand, within ABZR86_RS19675at 417.097 kb on + strand, within ABZR86_RS19675at 417.097 kb on + strand, within ABZR86_RS19675at 417.098 kb on - strand, within ABZR86_RS19675at 417.098 kb on - strand, within ABZR86_RS19675at 417.142 kb on + strand, within ABZR86_RS19675at 417.142 kb on + strand, within ABZR86_RS19675at 417.142 kb on + strand, within ABZR86_RS19675at 417.142 kb on + strand, within ABZR86_RS19675at 417.143 kb on - strand, within ABZR86_RS19675at 417.143 kb on - strand, within ABZR86_RS19675at 417.154 kb on + strand, within ABZR86_RS19675at 417.155 kb on - strand, within ABZR86_RS19675at 417.155 kb on - strand, within ABZR86_RS19675at 417.166 kb on - strand, within ABZR86_RS19675at 417.442 kb on + strand, within ABZR86_RS19675at 417.479 kb on + strand, within ABZR86_RS19675at 417.595 kb on - strandat 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.775 kb on + strand, within ABZR86_RS19680at 417.776 kb on - strand, within ABZR86_RS19680at 417.793 kb on + strand, within ABZR86_RS19680at 417.793 kb on + strand, within ABZR86_RS19680at 417.793 kb on + strand, within ABZR86_RS19680at 417.794 kb on - strand, within ABZR86_RS19680at 417.815 kb on + strand, within ABZR86_RS19680at 417.830 kb on - strand, within ABZR86_RS19680at 417.830 kb on - strand, within ABZR86_RS19680at 417.830 kb on - strand, within ABZR86_RS19680at 417.952 kb on + strand, within ABZR86_RS19680at 417.952 kb on + strand, within ABZR86_RS19680at 417.953 kb on - strand, within ABZR86_RS19680at 418.051 kb on + strand, within ABZR86_RS19680at 418.052 kb on - strand, within ABZR86_RS19680at 418.201 kb on + strand, within ABZR86_RS19680at 418.300 kb on + strand, within ABZR86_RS19680at 418.393 kb on + strand, within ABZR86_RS19680at 418.446 kb on + strand, within ABZR86_RS19680at 418.446 kb on + strand, within ABZR86_RS19680at 418.446 kb on + strand, within ABZR86_RS19680at 418.446 kb on + strand, within ABZR86_RS19680at 418.498 kb on + strand, within ABZR86_RS19680at 418.499 kb on - strand, within ABZR86_RS19680at 418.499 kb on - strand, within ABZR86_RS19680at 418.909 kb on + strandat 419.072 kb on + strandat 419.072 kb on + strandat 419.073 kb on - strandat 419.073 kb on - strandat 419.093 kb on + strandat 419.093 kb on + strandat 419.096 kb on + strandat 419.096 kb on + strandat 419.096 kb on + strandat 419.097 kb on - strandat 419.097 kb on - strandat 419.097 kb on - strandat 419.101 kb on + strandat 419.101 kb on + strandat 419.101 kb on + strandat 419.102 kb on - strandat 419.184 kb on + strand, within ABZR86_RS19685at 419.210 kb on + strand, within ABZR86_RS19685at 419.211 kb on - strand, within ABZR86_RS19685at 419.271 kb on - strand, within ABZR86_RS19685at 419.381 kb on + strand, within ABZR86_RS19685at 419.382 kb on - strand, within ABZR86_RS19685at 419.387 kb on + strand, within ABZR86_RS19685at 419.387 kb on + strand, within ABZR86_RS19685at 419.387 kb on + strand, within ABZR86_RS19685at 419.388 kb on - strand, within ABZR86_RS19685at 419.465 kb on + strand, within ABZR86_RS19685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 60 mM
remove
416,858 + +0.5
416,859 - +0.6
417,091 + ABZR86_RS19675 0.23 -0.2
417,091 + ABZR86_RS19675 0.23 -0.1
417,091 + ABZR86_RS19675 0.23 -0.1
417,092 - ABZR86_RS19675 0.23 +0.6
417,092 - ABZR86_RS19675 0.23 -0.3
417,092 - ABZR86_RS19675 0.23 +0.1
417,097 + ABZR86_RS19675 0.24 +0.3
417,097 + ABZR86_RS19675 0.24 +0.5
417,098 - ABZR86_RS19675 0.24 +0.1
417,098 - ABZR86_RS19675 0.24 -0.0
417,142 + ABZR86_RS19675 0.31 +0.6
417,142 + ABZR86_RS19675 0.31 -0.4
417,142 + ABZR86_RS19675 0.31 -0.0
417,142 + ABZR86_RS19675 0.31 +0.5
417,143 - ABZR86_RS19675 0.32 +0.2
417,143 - ABZR86_RS19675 0.32 -0.1
417,154 + ABZR86_RS19675 0.33 -1.9
417,155 - ABZR86_RS19675 0.33 -0.7
417,155 - ABZR86_RS19675 0.33 +0.6
417,166 - ABZR86_RS19675 0.35 -0.4
417,442 + ABZR86_RS19675 0.81 +0.6
417,479 + ABZR86_RS19675 0.87 +0.1
417,595 - -0.6
417,775 + ABZR86_RS19680 0.13 +0.0
417,775 + ABZR86_RS19680 0.13 -0.3
417,775 + ABZR86_RS19680 0.13 +0.3
417,775 + ABZR86_RS19680 0.13 -0.3
417,775 + ABZR86_RS19680 0.13 -1.7
417,775 + ABZR86_RS19680 0.13 -0.5
417,775 + ABZR86_RS19680 0.13 +0.0
417,776 - ABZR86_RS19680 0.13 -0.6
417,793 + ABZR86_RS19680 0.15 +0.2
417,793 + ABZR86_RS19680 0.15 +0.7
417,793 + ABZR86_RS19680 0.15 -0.0
417,794 - ABZR86_RS19680 0.15 +0.7
417,815 + ABZR86_RS19680 0.17 +0.1
417,830 - ABZR86_RS19680 0.19 -0.8
417,830 - ABZR86_RS19680 0.19 -0.0
417,830 - ABZR86_RS19680 0.19 -0.2
417,952 + ABZR86_RS19680 0.31 -0.1
417,952 + ABZR86_RS19680 0.31 +0.9
417,953 - ABZR86_RS19680 0.31 +0.5
418,051 + ABZR86_RS19680 0.40 -0.3
418,052 - ABZR86_RS19680 0.40 -0.1
418,201 + ABZR86_RS19680 0.55 -0.7
418,300 + ABZR86_RS19680 0.64 -0.9
418,393 + ABZR86_RS19680 0.73 +0.2
418,446 + ABZR86_RS19680 0.78 -0.3
418,446 + ABZR86_RS19680 0.78 +0.0
418,446 + ABZR86_RS19680 0.78 -0.2
418,446 + ABZR86_RS19680 0.78 -0.1
418,498 + ABZR86_RS19680 0.83 +0.7
418,499 - ABZR86_RS19680 0.84 -0.4
418,499 - ABZR86_RS19680 0.84 -0.7
418,909 + +0.3
419,072 + +0.5
419,072 + +0.5
419,073 - -0.6
419,073 - -0.5
419,093 + +0.3
419,093 + +0.3
419,096 + +0.8
419,096 + +0.2
419,096 + +0.0
419,097 - -0.1
419,097 - +0.6
419,097 - +0.8
419,101 + -0.0
419,101 + +0.1
419,101 + -0.3
419,102 - -1.5
419,184 + ABZR86_RS19685 0.15 -0.6
419,210 + ABZR86_RS19685 0.17 -0.1
419,211 - ABZR86_RS19685 0.17 +1.0
419,271 - ABZR86_RS19685 0.22 +0.4
419,381 + ABZR86_RS19685 0.30 +0.1
419,382 - ABZR86_RS19685 0.30 +0.0
419,387 + ABZR86_RS19685 0.30 -0.1
419,387 + ABZR86_RS19685 0.30 +0.1
419,387 + ABZR86_RS19685 0.30 +0.1
419,388 - ABZR86_RS19685 0.30 -0.2
419,465 + ABZR86_RS19685 0.36 -0.5

Or see this region's nucleotide sequence