Experiment: sodium fluoride 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18725 and ABZR86_RS18730 overlap by 4 nucleotides ABZR86_RS18730 and ABZR86_RS18735 overlap by 4 nucleotides ABZR86_RS18735 and ABZR86_RS18740 are separated by 194 nucleotides
ABZR86_RS18725: ABZR86_RS18725 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 171,280 to 171,837
_RS18725
ABZR86_RS18730: ABZR86_RS18730 - glucose-1-phosphate thymidylyltransferase RfbA, at 171,834 to 172,721
_RS18730
ABZR86_RS18735: ABZR86_RS18735 - dTDP-glucose 4,6-dehydratase, at 172,718 to 173,788
_RS18735
ABZR86_RS18740: ABZR86_RS18740 - hypothetical protein, at 173,983 to 174,705
_RS18740
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.871 kb on + strand at 171.872 kb on - strand at 171.872 kb on - strand at 172.006 kb on + strand, within ABZR86_RS18730 at 172.007 kb on - strand, within ABZR86_RS18730 at 172.192 kb on + strand, within ABZR86_RS18730 at 172.378 kb on + strand, within ABZR86_RS18730 at 172.378 kb on + strand, within ABZR86_RS18730 at 172.379 kb on - strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.609 kb on + strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.610 kb on - strand, within ABZR86_RS18730 at 172.670 kb on - strand at 172.670 kb on - strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.709 kb on + strand at 172.710 kb on - strand at 172.710 kb on - strand at 172.710 kb on - strand at 172.738 kb on + strand at 172.738 kb on + strand at 172.743 kb on + strand at 172.744 kb on - strand at 172.744 kb on - strand at 172.744 kb on - strand at 172.879 kb on - strand, within ABZR86_RS18735 at 173.027 kb on - strand, within ABZR86_RS18735 at 173.027 kb on - strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.028 kb on + strand, within ABZR86_RS18735 at 173.029 kb on - strand, within ABZR86_RS18735 at 173.029 kb on - strand, within ABZR86_RS18735 at 173.202 kb on + strand, within ABZR86_RS18735 at 173.202 kb on + strand, within ABZR86_RS18735 at 173.203 kb on - strand, within ABZR86_RS18735 at 173.241 kb on + strand, within ABZR86_RS18735 at 173.241 kb on + strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.359 kb on - strand, within ABZR86_RS18735 at 173.609 kb on + strand, within ABZR86_RS18735 at 173.609 kb on + strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.610 kb on - strand, within ABZR86_RS18735 at 173.788 kb on + strand at 173.788 kb on + strand at 173.795 kb on + strand at 173.795 kb on + strand at 173.796 kb on - strand at 173.796 kb on - strand at 173.796 kb on - strand at 173.796 kb on - strand at 173.796 kb on - strand at 173.804 kb on - strand at 173.884 kb on + strand at 173.885 kb on - strand at 173.885 kb on - strand at 173.885 kb on - strand at 173.885 kb on - strand at 173.885 kb on - strand at 173.963 kb on + strand at 173.964 kb on - strand at 174.038 kb on + strand at 174.038 kb on + strand at 174.039 kb on - strand at 174.039 kb on - strand at 174.039 kb on - strand at 174.168 kb on - strand, within ABZR86_RS18740 at 174.201 kb on - strand, within ABZR86_RS18740 at 174.201 kb on - strand, within ABZR86_RS18740 at 174.213 kb on - strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.233 kb on + strand, within ABZR86_RS18740 at 174.234 kb on - strand, within ABZR86_RS18740 at 174.234 kb on - strand, within ABZR86_RS18740 at 174.416 kb on + strand, within ABZR86_RS18740 at 174.416 kb on + strand, within ABZR86_RS18740 at 174.416 kb on + strand, within ABZR86_RS18740 at 174.416 kb on + strand, within ABZR86_RS18740 at 174.416 kb on + strand, within ABZR86_RS18740 at 174.417 kb on - strand, within ABZR86_RS18740 at 174.485 kb on + strand, within ABZR86_RS18740 at 174.486 kb on - strand, within ABZR86_RS18740 at 174.486 kb on - strand, within ABZR86_RS18740 at 174.486 kb on - strand, within ABZR86_RS18740 at 174.486 kb on - strand, within ABZR86_RS18740 at 174.723 kb on + strand at 174.734 kb on + strand at 174.735 kb on - strand at 174.752 kb on - strand at 174.752 kb on - strand at 174.762 kb on + strand at 174.762 kb on + strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.763 kb on - strand at 174.768 kb on + strand at 174.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 60 mM remove 171,749 + ABZR86_RS18725 0.84 +0.3 171,749 + ABZR86_RS18725 0.84 +0.6 171,750 - ABZR86_RS18725 0.84 +0.8 171,750 - ABZR86_RS18725 0.84 +1.3 171,871 + +1.6 171,872 - +1.2 171,872 - +0.9 172,006 + ABZR86_RS18730 0.19 +1.0 172,007 - ABZR86_RS18730 0.19 +0.2 172,192 + ABZR86_RS18730 0.40 +0.5 172,378 + ABZR86_RS18730 0.61 +0.8 172,378 + ABZR86_RS18730 0.61 +0.1 172,379 - ABZR86_RS18730 0.61 +1.3 172,609 + ABZR86_RS18730 0.87 +1.4 172,609 + ABZR86_RS18730 0.87 +0.8 172,609 + ABZR86_RS18730 0.87 -0.2 172,609 + ABZR86_RS18730 0.87 +0.3 172,609 + ABZR86_RS18730 0.87 +0.8 172,610 - ABZR86_RS18730 0.87 +1.0 172,610 - ABZR86_RS18730 0.87 +0.5 172,610 - ABZR86_RS18730 0.87 -0.1 172,670 - +0.7 172,670 - +0.5 172,709 + +1.8 172,709 + +0.8 172,709 + +0.7 172,709 + +1.7 172,710 - +1.8 172,710 - +0.2 172,710 - -0.5 172,738 + +1.1 172,738 + +1.8 172,743 + +0.6 172,744 - +0.4 172,744 - +1.4 172,744 - +0.4 172,879 - ABZR86_RS18735 0.15 +1.0 173,027 - ABZR86_RS18735 0.29 +0.8 173,027 - ABZR86_RS18735 0.29 -0.3 173,028 + ABZR86_RS18735 0.29 +1.6 173,028 + ABZR86_RS18735 0.29 +0.5 173,028 + ABZR86_RS18735 0.29 +1.4 173,028 + ABZR86_RS18735 0.29 +0.5 173,028 + ABZR86_RS18735 0.29 +1.6 173,028 + ABZR86_RS18735 0.29 +0.9 173,029 - ABZR86_RS18735 0.29 +1.0 173,029 - ABZR86_RS18735 0.29 +1.3 173,202 + ABZR86_RS18735 0.45 +0.3 173,202 + ABZR86_RS18735 0.45 +0.8 173,203 - ABZR86_RS18735 0.45 -0.3 173,241 + ABZR86_RS18735 0.49 +1.2 173,241 + ABZR86_RS18735 0.49 +1.1 173,359 - ABZR86_RS18735 0.60 -0.2 173,359 - ABZR86_RS18735 0.60 +0.9 173,359 - ABZR86_RS18735 0.60 -0.4 173,359 - ABZR86_RS18735 0.60 +1.5 173,609 + ABZR86_RS18735 0.83 +0.6 173,609 + ABZR86_RS18735 0.83 +0.5 173,610 - ABZR86_RS18735 0.83 +0.8 173,610 - ABZR86_RS18735 0.83 +0.4 173,610 - ABZR86_RS18735 0.83 +1.6 173,610 - ABZR86_RS18735 0.83 +0.8 173,610 - ABZR86_RS18735 0.83 +1.3 173,788 + +0.6 173,788 + -0.7 173,795 + +0.8 173,795 + +0.7 173,796 - +0.9 173,796 - +0.2 173,796 - +0.5 173,796 - +0.8 173,796 - +0.3 173,804 - -0.1 173,884 + +0.7 173,885 - -0.3 173,885 - -0.6 173,885 - +0.6 173,885 - +0.0 173,885 - -0.7 173,963 + -0.6 173,964 - +1.1 174,038 + +0.3 174,038 + -0.1 174,039 - +0.3 174,039 - +0.9 174,039 - +0.5 174,168 - ABZR86_RS18740 0.26 +1.0 174,201 - ABZR86_RS18740 0.30 +0.1 174,201 - ABZR86_RS18740 0.30 -0.5 174,213 - ABZR86_RS18740 0.32 -0.1 174,233 + ABZR86_RS18740 0.35 +0.6 174,233 + ABZR86_RS18740 0.35 +0.2 174,233 + ABZR86_RS18740 0.35 +0.3 174,233 + ABZR86_RS18740 0.35 -0.4 174,233 + ABZR86_RS18740 0.35 +0.5 174,233 + ABZR86_RS18740 0.35 +0.2 174,233 + ABZR86_RS18740 0.35 +0.4 174,233 + ABZR86_RS18740 0.35 +0.4 174,234 - ABZR86_RS18740 0.35 -0.4 174,234 - ABZR86_RS18740 0.35 -0.1 174,416 + ABZR86_RS18740 0.60 -0.0 174,416 + ABZR86_RS18740 0.60 -0.4 174,416 + ABZR86_RS18740 0.60 +0.4 174,416 + ABZR86_RS18740 0.60 +0.1 174,416 + ABZR86_RS18740 0.60 +0.1 174,417 - ABZR86_RS18740 0.60 +0.2 174,485 + ABZR86_RS18740 0.69 -0.0 174,486 - ABZR86_RS18740 0.70 -1.2 174,486 - ABZR86_RS18740 0.70 +1.7 174,486 - ABZR86_RS18740 0.70 +0.0 174,486 - ABZR86_RS18740 0.70 +0.2 174,723 + -0.4 174,734 + +0.8 174,735 - -0.8 174,752 - -0.0 174,752 - +0.2 174,762 + -0.3 174,762 + -0.4 174,763 - -0.1 174,763 - +0.1 174,763 - -0.5 174,763 - +0.4 174,763 - +0.5 174,763 - -0.2 174,763 - +0.1 174,763 - -1.9 174,763 - +0.5 174,763 - -0.2 174,763 - +0.2 174,768 + -0.4 174,769 - +0.2
Or see this region's nucleotide sequence