Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10655

Experiment: sodium fluoride 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10645 and ABZR86_RS10650 are separated by 143 nucleotidesABZR86_RS10650 and ABZR86_RS10655 are separated by 39 nucleotidesABZR86_RS10655 and ABZR86_RS10660 overlap by 1 nucleotidesABZR86_RS10660 and ABZR86_RS10665 overlap by 1 nucleotidesABZR86_RS10665 and ABZR86_RS10670 are separated by 38 nucleotides ABZR86_RS10645: ABZR86_RS10645 - thiamine-phosphate kinase, at 2,367,514 to 2,368,488 _RS10645 ABZR86_RS10650: ABZR86_RS10650 - nuclear transport factor 2 family protein, at 2,368,632 to 2,369,105 _RS10650 ABZR86_RS10655: ABZR86_RS10655 - GNAT family N-acetyltransferase, at 2,369,145 to 2,369,678 _RS10655 ABZR86_RS10660: ABZR86_RS10660 - transcription antitermination factor NusB, at 2,369,678 to 2,370,124 _RS10660 ABZR86_RS10665: ABZR86_RS10665 - 6,7-dimethyl-8-ribityllumazine synthase, at 2,370,124 to 2,370,591 _RS10665 ABZR86_RS10670: ABZR86_RS10670 - muramoyltetrapeptide carboxypeptidase, at 2,370,630 to 2,371,589 _RS10670 Position (kb) 2369 2370Strain fitness (log2 ratio) -2 -1 0 1at 2368.565 kb on + strandat 2368.565 kb on + strandat 2368.565 kb on + strandat 2368.566 kb on - strandat 2368.566 kb on - strandat 2368.597 kb on - strandat 2368.612 kb on - strandat 2368.612 kb on - strandat 2368.693 kb on + strand, within ABZR86_RS10650at 2368.738 kb on + strand, within ABZR86_RS10650at 2368.863 kb on + strand, within ABZR86_RS10650at 2368.864 kb on - strand, within ABZR86_RS10650at 2368.864 kb on - strand, within ABZR86_RS10650at 2368.874 kb on + strand, within ABZR86_RS10650at 2368.974 kb on + strand, within ABZR86_RS10650at 2368.974 kb on + strand, within ABZR86_RS10650at 2369.104 kb on - strandat 2369.146 kb on + strandat 2369.146 kb on + strandat 2369.146 kb on + strandat 2369.146 kb on + strandat 2369.146 kb on + strandat 2369.147 kb on - strandat 2369.147 kb on - strandat 2369.147 kb on - strandat 2369.147 kb on - strandat 2369.147 kb on - strandat 2369.147 kb on - strandat 2369.434 kb on + strand, within ABZR86_RS10655at 2369.435 kb on - strand, within ABZR86_RS10655at 2369.435 kb on - strand, within ABZR86_RS10655at 2370.590 kb on - strandat 2370.607 kb on - strandat 2370.607 kb on - strandat 2370.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 60 mM
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2,368,565 + +0.5
2,368,565 + -0.0
2,368,565 + +0.3
2,368,566 - -0.6
2,368,566 - -2.0
2,368,597 - +0.6
2,368,612 - -0.2
2,368,612 - -0.0
2,368,693 + ABZR86_RS10650 0.13 +0.2
2,368,738 + ABZR86_RS10650 0.22 -0.1
2,368,863 + ABZR86_RS10650 0.49 +0.2
2,368,864 - ABZR86_RS10650 0.49 +0.4
2,368,864 - ABZR86_RS10650 0.49 +0.1
2,368,874 + ABZR86_RS10650 0.51 -0.5
2,368,974 + ABZR86_RS10650 0.72 -0.5
2,368,974 + ABZR86_RS10650 0.72 -1.2
2,369,104 - -0.6
2,369,146 + -0.1
2,369,146 + +0.8
2,369,146 + +0.0
2,369,146 + -0.6
2,369,146 + +0.4
2,369,147 - -0.8
2,369,147 - -0.7
2,369,147 - +0.5
2,369,147 - +0.1
2,369,147 - -0.4
2,369,147 - -0.2
2,369,434 + ABZR86_RS10655 0.54 +0.4
2,369,435 - ABZR86_RS10655 0.54 -0.4
2,369,435 - ABZR86_RS10655 0.54 +0.9
2,370,590 - -0.3
2,370,607 - -0.1
2,370,607 - +0.1
2,370,607 - +0.5

Or see this region's nucleotide sequence