Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01100

Experiment: sodium fluoride 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01095 and ABZR86_RS01100 are separated by 486 nucleotidesABZR86_RS01100 and ABZR86_RS01105 overlap by 1 nucleotidesABZR86_RS01105 and ABZR86_RS01110 are separated by 201 nucleotides ABZR86_RS01095: ABZR86_RS01095 - elongation factor G, at 217,162 to 219,327 _RS01095 ABZR86_RS01100: ABZR86_RS01100 - catalase family peroxidase, at 219,814 to 220,902 _RS01100 ABZR86_RS01105: ABZR86_RS01105 - cytochrome b/b6 domain-containing protein, at 220,902 to 221,447 _RS01105 ABZR86_RS01110: ABZR86_RS01110 - hypothetical protein, at 221,649 to 222,344 _RS01110 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 218.855 kb on - strand, within ABZR86_RS01095at 218.855 kb on - strand, within ABZR86_RS01095at 218.914 kb on + strand, within ABZR86_RS01095at 218.956 kb on + strand, within ABZR86_RS01095at 218.956 kb on + strand, within ABZR86_RS01095at 218.957 kb on - strand, within ABZR86_RS01095at 218.957 kb on - strand, within ABZR86_RS01095at 219.088 kb on + strand, within ABZR86_RS01095at 219.088 kb on + strand, within ABZR86_RS01095at 219.205 kb on + strandat 219.205 kb on + strandat 219.206 kb on - strandat 219.268 kb on + strandat 219.269 kb on - strandat 219.269 kb on - strandat 219.325 kb on + strandat 219.325 kb on + strandat 219.326 kb on - strandat 219.326 kb on - strandat 219.326 kb on - strandat 219.326 kb on - strandat 219.326 kb on - strandat 219.326 kb on - strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.449 kb on - strandat 219.499 kb on + strandat 219.499 kb on + strandat 219.499 kb on + strandat 219.500 kb on - strandat 219.500 kb on - strandat 219.500 kb on - strandat 219.500 kb on - strandat 219.500 kb on - strandat 219.500 kb on - strandat 219.503 kb on + strandat 219.503 kb on + strandat 219.554 kb on - strandat 219.662 kb on + strandat 219.662 kb on + strandat 219.662 kb on + strandat 219.662 kb on + strandat 219.663 kb on - strandat 219.663 kb on - strandat 219.663 kb on - strandat 219.746 kb on - strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.752 kb on + strandat 219.753 kb on - strandat 219.753 kb on - strandat 219.753 kb on - strandat 219.753 kb on - strandat 219.878 kb on - strandat 219.925 kb on + strand, within ABZR86_RS01100at 219.925 kb on + strand, within ABZR86_RS01100at 219.926 kb on - strand, within ABZR86_RS01100at 219.926 kb on - strand, within ABZR86_RS01100at 220.159 kb on + strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.206 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.750 kb on + strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.763 kb on + strand, within ABZR86_RS01100at 220.764 kb on - strand, within ABZR86_RS01100at 220.822 kb on + strandat 220.822 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.835 kb on - strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.920 kb on - strandat 220.920 kb on - strandat 220.927 kb on + strandat 220.927 kb on + strandat 220.928 kb on - strandat 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.492 kb on - strandat 221.492 kb on - strandat 221.620 kb on - strandat 221.799 kb on + strand, within ABZR86_RS01110at 221.799 kb on + strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 60 mM
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218,855 - ABZR86_RS01095 0.78 +0.4
218,855 - ABZR86_RS01095 0.78 +0.3
218,914 + ABZR86_RS01095 0.81 +0.3
218,956 + ABZR86_RS01095 0.83 -0.3
218,956 + ABZR86_RS01095 0.83 +0.3
218,957 - ABZR86_RS01095 0.83 +0.5
218,957 - ABZR86_RS01095 0.83 +0.3
219,088 + ABZR86_RS01095 0.89 -0.4
219,088 + ABZR86_RS01095 0.89 -0.3
219,205 + +0.8
219,205 + -0.5
219,206 - +0.4
219,268 + +0.3
219,269 - +0.5
219,269 - -0.2
219,325 + +0.1
219,325 + -0.8
219,326 - +0.2
219,326 - -0.1
219,326 - -0.7
219,326 - -0.1
219,326 - -0.1
219,326 - -0.3
219,448 + -0.5
219,448 + -0.3
219,448 + -0.1
219,449 - -0.3
219,499 + -1.4
219,499 + +0.0
219,499 + -0.0
219,500 - -0.4
219,500 - +0.1
219,500 - +0.3
219,500 - +0.3
219,500 - -0.3
219,500 - -0.5
219,503 + -0.1
219,503 + +0.4
219,554 - +0.1
219,662 + +0.2
219,662 + +0.3
219,662 + -0.1
219,662 + -0.2
219,663 - +0.6
219,663 - -0.7
219,663 - -0.0
219,746 - +2.0
219,752 + +0.2
219,752 + +0.9
219,752 + +0.1
219,752 + -0.4
219,752 + -0.8
219,752 + +0.4
219,752 + -0.5
219,752 + +0.9
219,752 + +0.4
219,752 + +0.4
219,753 - -0.3
219,753 - -0.7
219,753 - -0.3
219,753 - +1.0
219,878 - -0.3
219,925 + ABZR86_RS01100 0.10 -0.9
219,925 + ABZR86_RS01100 0.10 +0.1
219,926 - ABZR86_RS01100 0.10 -0.2
219,926 - ABZR86_RS01100 0.10 -0.9
220,159 + ABZR86_RS01100 0.32 -0.0
220,160 - ABZR86_RS01100 0.32 -0.5
220,160 - ABZR86_RS01100 0.32 +0.0
220,160 - ABZR86_RS01100 0.32 -1.0
220,160 - ABZR86_RS01100 0.32 +0.6
220,206 + ABZR86_RS01100 0.36 +0.4
220,438 + ABZR86_RS01100 0.57 -0.3
220,438 + ABZR86_RS01100 0.57 -0.7
220,438 + ABZR86_RS01100 0.57 +0.1
220,438 + ABZR86_RS01100 0.57 -0.6
220,438 + ABZR86_RS01100 0.57 -0.3
220,438 + ABZR86_RS01100 0.57 -0.3
220,438 + ABZR86_RS01100 0.57 -0.0
220,438 + ABZR86_RS01100 0.57 -0.1
220,439 - ABZR86_RS01100 0.57 +0.0
220,439 - ABZR86_RS01100 0.57 -0.9
220,439 - ABZR86_RS01100 0.57 +0.4
220,439 - ABZR86_RS01100 0.57 -0.3
220,439 - ABZR86_RS01100 0.57 +0.4
220,439 - ABZR86_RS01100 0.57 -0.4
220,439 - ABZR86_RS01100 0.57 -0.6
220,439 - ABZR86_RS01100 0.57 -0.4
220,439 - ABZR86_RS01100 0.57 -0.1
220,439 - ABZR86_RS01100 0.57 -0.5
220,439 - ABZR86_RS01100 0.57 +0.3
220,548 + ABZR86_RS01100 0.67 -1.8
220,548 + ABZR86_RS01100 0.67 +0.1
220,548 + ABZR86_RS01100 0.67 +0.1
220,549 - ABZR86_RS01100 0.67 -0.4
220,549 - ABZR86_RS01100 0.67 -0.1
220,549 - ABZR86_RS01100 0.67 -0.3
220,552 + ABZR86_RS01100 0.68 -0.6
220,552 + ABZR86_RS01100 0.68 -0.9
220,552 + ABZR86_RS01100 0.68 -0.5
220,552 + ABZR86_RS01100 0.68 -0.1
220,552 + ABZR86_RS01100 0.68 +0.3
220,553 - ABZR86_RS01100 0.68 -0.0
220,553 - ABZR86_RS01100 0.68 -0.2
220,553 - ABZR86_RS01100 0.68 +0.6
220,553 - ABZR86_RS01100 0.68 +0.4
220,553 - ABZR86_RS01100 0.68 -0.2
220,553 - ABZR86_RS01100 0.68 +0.2
220,553 - ABZR86_RS01100 0.68 +0.1
220,553 - ABZR86_RS01100 0.68 -0.2
220,553 - ABZR86_RS01100 0.68 -0.3
220,750 + ABZR86_RS01100 0.86 +0.2
220,751 - ABZR86_RS01100 0.86 +0.3
220,751 - ABZR86_RS01100 0.86 +0.6
220,751 - ABZR86_RS01100 0.86 -0.2
220,763 + ABZR86_RS01100 0.87 +0.4
220,764 - ABZR86_RS01100 0.87 +0.4
220,822 + -0.4
220,822 + +0.1
220,834 + -0.1
220,834 + +0.1
220,835 - -0.6
220,919 + +0.5
220,919 + -0.1
220,919 + -0.5
220,919 + -0.8
220,919 + +1.1
220,920 - +0.5
220,920 - -0.6
220,927 + -0.2
220,927 + +1.1
220,928 - +0.4
221,181 + ABZR86_RS01105 0.51 +0.3
221,181 + ABZR86_RS01105 0.51 +0.1
221,181 + ABZR86_RS01105 0.51 -1.1
221,181 + ABZR86_RS01105 0.51 -0.1
221,181 + ABZR86_RS01105 0.51 -0.1
221,181 + ABZR86_RS01105 0.51 -0.4
221,182 - ABZR86_RS01105 0.51 +0.9
221,182 - ABZR86_RS01105 0.51 +0.7
221,182 - ABZR86_RS01105 0.51 -0.3
221,492 - +0.3
221,492 - +0.1
221,620 - -0.1
221,799 + ABZR86_RS01110 0.22 +0.4
221,799 + ABZR86_RS01110 0.22 +0.6
221,800 - ABZR86_RS01110 0.22 -0.4
221,800 - ABZR86_RS01110 0.22 +0.4

Or see this region's nucleotide sequence