Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00585

Experiment: sodium fluoride 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00580 and ABZR86_RS00585 are separated by 97 nucleotidesABZR86_RS00585 and ABZR86_RS00590 are separated by 130 nucleotidesABZR86_RS00590 and ABZR86_RS00595 are separated by 91 nucleotides ABZR86_RS00580: ABZR86_RS00580 - protease HtpX, at 109,610 to 110,500 _RS00580 ABZR86_RS00585: ABZR86_RS00585 - molecular chaperone HtpG, at 110,598 to 112,460 _RS00585 ABZR86_RS00590: ABZR86_RS00590 - hypothetical protein, at 112,591 to 113,148 _RS00590 ABZR86_RS00595: ABZR86_RS00595 - NAD(P)/FAD-dependent oxidoreductase, at 113,240 to 114,382 _RS00595 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -1 0 1 2at 109.636 kb on + strandat 109.636 kb on + strandat 109.636 kb on + strandat 109.637 kb on - strandat 109.743 kb on - strand, within ABZR86_RS00580at 109.743 kb on - strand, within ABZR86_RS00580at 109.743 kb on - strand, within ABZR86_RS00580at 109.743 kb on - strand, within ABZR86_RS00580at 109.926 kb on - strand, within ABZR86_RS00580at 109.926 kb on - strand, within ABZR86_RS00580at 110.110 kb on + strand, within ABZR86_RS00580at 110.111 kb on - strand, within ABZR86_RS00580at 110.205 kb on - strand, within ABZR86_RS00580at 110.205 kb on - strand, within ABZR86_RS00580at 110.550 kb on + strandat 110.550 kb on + strandat 110.551 kb on - strandat 110.551 kb on - strandat 110.668 kb on - strandat 110.976 kb on + strand, within ABZR86_RS00585at 111.192 kb on + strand, within ABZR86_RS00585at 111.324 kb on + strand, within ABZR86_RS00585at 111.325 kb on - strand, within ABZR86_RS00585at 111.325 kb on - strand, within ABZR86_RS00585at 111.336 kb on + strand, within ABZR86_RS00585at 111.336 kb on + strand, within ABZR86_RS00585at 111.336 kb on + strand, within ABZR86_RS00585at 111.423 kb on + strand, within ABZR86_RS00585at 111.423 kb on + strand, within ABZR86_RS00585at 111.423 kb on + strand, within ABZR86_RS00585at 111.423 kb on + strand, within ABZR86_RS00585at 111.423 kb on + strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.424 kb on - strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.492 kb on + strand, within ABZR86_RS00585at 111.493 kb on - strand, within ABZR86_RS00585at 111.493 kb on - strand, within ABZR86_RS00585at 111.493 kb on - strand, within ABZR86_RS00585at 111.544 kb on - strand, within ABZR86_RS00585at 111.544 kb on - strand, within ABZR86_RS00585at 111.717 kb on + strand, within ABZR86_RS00585at 111.718 kb on - strand, within ABZR86_RS00585at 111.718 kb on - strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.849 kb on + strand, within ABZR86_RS00585at 111.850 kb on - strand, within ABZR86_RS00585at 111.888 kb on + strand, within ABZR86_RS00585at 111.888 kb on + strand, within ABZR86_RS00585at 111.888 kb on + strand, within ABZR86_RS00585at 111.888 kb on + strand, within ABZR86_RS00585at 111.889 kb on - strand, within ABZR86_RS00585at 111.889 kb on - strand, within ABZR86_RS00585at 112.017 kb on + strand, within ABZR86_RS00585at 112.018 kb on - strand, within ABZR86_RS00585at 112.168 kb on + strand, within ABZR86_RS00585at 112.168 kb on + strand, within ABZR86_RS00585at 112.215 kb on + strand, within ABZR86_RS00585at 112.215 kb on + strand, within ABZR86_RS00585at 112.215 kb on + strand, within ABZR86_RS00585at 112.215 kb on + strand, within ABZR86_RS00585at 112.216 kb on - strand, within ABZR86_RS00585at 112.481 kb on - strandat 112.481 kb on - strandat 112.481 kb on - strandat 112.481 kb on - strandat 112.526 kb on + strandat 112.526 kb on + strandat 112.526 kb on + strandat 112.526 kb on + strandat 112.527 kb on - strandat 112.527 kb on - strandat 112.527 kb on - strandat 112.718 kb on + strand, within ABZR86_RS00590at 112.727 kb on + strand, within ABZR86_RS00590at 112.727 kb on + strand, within ABZR86_RS00590at 112.728 kb on - strand, within ABZR86_RS00590at 112.728 kb on - strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.731 kb on + strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.732 kb on - strand, within ABZR86_RS00590at 112.826 kb on + strand, within ABZR86_RS00590at 112.826 kb on + strand, within ABZR86_RS00590at 112.827 kb on - strand, within ABZR86_RS00590at 112.827 kb on - strand, within ABZR86_RS00590at 112.844 kb on + strand, within ABZR86_RS00590at 112.844 kb on + strand, within ABZR86_RS00590at 112.844 kb on + strand, within ABZR86_RS00590at 112.845 kb on - strand, within ABZR86_RS00590at 112.845 kb on - strand, within ABZR86_RS00590at 112.845 kb on - strand, within ABZR86_RS00590at 112.845 kb on - strand, within ABZR86_RS00590

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 60 mM
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109,636 + -1.1
109,636 + -0.4
109,636 + -0.3
109,637 - -0.5
109,743 - ABZR86_RS00580 0.15 +0.4
109,743 - ABZR86_RS00580 0.15 -0.4
109,743 - ABZR86_RS00580 0.15 -0.9
109,743 - ABZR86_RS00580 0.15 -0.6
109,926 - ABZR86_RS00580 0.35 +0.3
109,926 - ABZR86_RS00580 0.35 -0.1
110,110 + ABZR86_RS00580 0.56 +0.1
110,111 - ABZR86_RS00580 0.56 -0.6
110,205 - ABZR86_RS00580 0.67 +0.2
110,205 - ABZR86_RS00580 0.67 -0.0
110,550 + +0.2
110,550 + +1.4
110,551 - +0.2
110,551 - +0.6
110,668 - -0.2
110,976 + ABZR86_RS00585 0.20 +0.0
111,192 + ABZR86_RS00585 0.32 -0.9
111,324 + ABZR86_RS00585 0.39 +0.1
111,325 - ABZR86_RS00585 0.39 -0.3
111,325 - ABZR86_RS00585 0.39 -0.1
111,336 + ABZR86_RS00585 0.40 +0.8
111,336 + ABZR86_RS00585 0.40 +0.4
111,336 + ABZR86_RS00585 0.40 +0.1
111,423 + ABZR86_RS00585 0.44 +0.1
111,423 + ABZR86_RS00585 0.44 -0.1
111,423 + ABZR86_RS00585 0.44 +0.6
111,423 + ABZR86_RS00585 0.44 +0.2
111,423 + ABZR86_RS00585 0.44 +0.7
111,424 - ABZR86_RS00585 0.44 -0.7
111,424 - ABZR86_RS00585 0.44 -0.2
111,424 - ABZR86_RS00585 0.44 +0.1
111,424 - ABZR86_RS00585 0.44 -0.2
111,424 - ABZR86_RS00585 0.44 -0.3
111,424 - ABZR86_RS00585 0.44 +1.8
111,424 - ABZR86_RS00585 0.44 +0.5
111,492 + ABZR86_RS00585 0.48 -0.5
111,492 + ABZR86_RS00585 0.48 +0.1
111,492 + ABZR86_RS00585 0.48 -0.7
111,492 + ABZR86_RS00585 0.48 +0.1
111,492 + ABZR86_RS00585 0.48 +0.0
111,492 + ABZR86_RS00585 0.48 +0.1
111,492 + ABZR86_RS00585 0.48 +0.6
111,493 - ABZR86_RS00585 0.48 +0.3
111,493 - ABZR86_RS00585 0.48 -0.4
111,493 - ABZR86_RS00585 0.48 +0.4
111,544 - ABZR86_RS00585 0.51 +0.4
111,544 - ABZR86_RS00585 0.51 +0.2
111,717 + ABZR86_RS00585 0.60 +0.2
111,718 - ABZR86_RS00585 0.60 -0.3
111,718 - ABZR86_RS00585 0.60 -0.6
111,849 + ABZR86_RS00585 0.67 +0.5
111,849 + ABZR86_RS00585 0.67 -0.7
111,849 + ABZR86_RS00585 0.67 +0.7
111,849 + ABZR86_RS00585 0.67 +1.7
111,849 + ABZR86_RS00585 0.67 -1.3
111,849 + ABZR86_RS00585 0.67 +0.6
111,849 + ABZR86_RS00585 0.67 +0.2
111,850 - ABZR86_RS00585 0.67 +0.5
111,888 + ABZR86_RS00585 0.69 +0.4
111,888 + ABZR86_RS00585 0.69 -0.1
111,888 + ABZR86_RS00585 0.69 +0.4
111,888 + ABZR86_RS00585 0.69 +0.2
111,889 - ABZR86_RS00585 0.69 +0.3
111,889 - ABZR86_RS00585 0.69 -0.1
112,017 + ABZR86_RS00585 0.76 +0.2
112,018 - ABZR86_RS00585 0.76 -0.1
112,168 + ABZR86_RS00585 0.84 +0.2
112,168 + ABZR86_RS00585 0.84 +0.2
112,215 + ABZR86_RS00585 0.87 -0.6
112,215 + ABZR86_RS00585 0.87 -0.2
112,215 + ABZR86_RS00585 0.87 +0.8
112,215 + ABZR86_RS00585 0.87 +0.0
112,216 - ABZR86_RS00585 0.87 -0.5
112,481 - -0.0
112,481 - -0.1
112,481 - +0.2
112,481 - +0.1
112,526 + -0.5
112,526 + -0.3
112,526 + +0.4
112,526 + -0.2
112,527 - -0.5
112,527 - +0.1
112,527 - -0.0
112,718 + ABZR86_RS00590 0.23 +0.3
112,727 + ABZR86_RS00590 0.24 -0.6
112,727 + ABZR86_RS00590 0.24 -0.3
112,728 - ABZR86_RS00590 0.25 +0.0
112,728 - ABZR86_RS00590 0.25 -0.1
112,731 + ABZR86_RS00590 0.25 +0.4
112,731 + ABZR86_RS00590 0.25 +1.0
112,731 + ABZR86_RS00590 0.25 -0.6
112,731 + ABZR86_RS00590 0.25 -0.3
112,731 + ABZR86_RS00590 0.25 -0.2
112,731 + ABZR86_RS00590 0.25 +0.1
112,731 + ABZR86_RS00590 0.25 +0.3
112,731 + ABZR86_RS00590 0.25 -0.2
112,731 + ABZR86_RS00590 0.25 -0.3
112,731 + ABZR86_RS00590 0.25 +0.5
112,732 - ABZR86_RS00590 0.25 +0.3
112,732 - ABZR86_RS00590 0.25 +0.1
112,732 - ABZR86_RS00590 0.25 +0.2
112,732 - ABZR86_RS00590 0.25 +0.2
112,732 - ABZR86_RS00590 0.25 -0.3
112,732 - ABZR86_RS00590 0.25 -0.2
112,732 - ABZR86_RS00590 0.25 -0.2
112,826 + ABZR86_RS00590 0.42 -0.6
112,826 + ABZR86_RS00590 0.42 -0.2
112,827 - ABZR86_RS00590 0.42 +0.4
112,827 - ABZR86_RS00590 0.42 -0.1
112,844 + ABZR86_RS00590 0.45 -1.4
112,844 + ABZR86_RS00590 0.45 -0.6
112,844 + ABZR86_RS00590 0.45 +0.1
112,845 - ABZR86_RS00590 0.46 +0.4
112,845 - ABZR86_RS00590 0.46 -0.1
112,845 - ABZR86_RS00590 0.46 +0.2
112,845 - ABZR86_RS00590 0.46 +0.5

Or see this region's nucleotide sequence