Experiment: polygalacturonic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4015 and BT4016 are separated by 1 nucleotides BT4016 and BT4017 are separated by 5 nucleotides BT4017 and BT4018 overlap by 16 nucleotides BT4018 and BT4019 are separated by 657 nucleotides
BT4015: BT4015 - transposase (NCBI ptt file), at 5,233,402 to 5,234,610
BT4015
BT4016: BT4016 - hypothetical protein (NCBI ptt file), at 5,234,612 to 5,235,034
BT4016
BT4017: BT4017 - hypothetical protein (NCBI ptt file), at 5,235,040 to 5,235,330
BT4017
BT4018: BT4018 - hypothetical protein (NCBI ptt file), at 5,235,315 to 5,235,782
BT4018
BT4019: BT4019 - hypothetical protein (NCBI ptt file), at 5,236,440 to 5,236,880
BT4019
Position (kb) 5235
5236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5234.317 kb on + strand, within BT4015 at 5234.318 kb on - strand, within BT4015 at 5234.320 kb on - strand, within BT4015 at 5234.395 kb on - strand, within BT4015 at 5234.417 kb on + strand, within BT4015 at 5234.443 kb on + strand, within BT4015 at 5234.444 kb on - strand, within BT4015 at 5234.445 kb on + strand, within BT4015 at 5234.445 kb on + strand, within BT4015 at 5234.446 kb on - strand, within BT4015 at 5234.453 kb on - strand, within BT4015 at 5234.549 kb on + strand at 5234.610 kb on + strand at 5234.712 kb on + strand, within BT4016 at 5234.713 kb on - strand, within BT4016 at 5234.776 kb on - strand, within BT4016 at 5234.829 kb on + strand, within BT4016 at 5234.830 kb on - strand, within BT4016 at 5234.912 kb on + strand, within BT4016 at 5234.913 kb on - strand, within BT4016 at 5234.913 kb on - strand, within BT4016 at 5234.913 kb on - strand, within BT4016 at 5234.928 kb on + strand, within BT4016 at 5235.019 kb on + strand at 5235.020 kb on - strand at 5235.065 kb on + strand at 5235.117 kb on + strand, within BT4017 at 5235.181 kb on + strand, within BT4017 at 5235.244 kb on + strand, within BT4017 at 5235.381 kb on + strand, within BT4018 at 5235.383 kb on + strand, within BT4018 at 5235.483 kb on - strand, within BT4018 at 5235.514 kb on + strand, within BT4018 at 5236.246 kb on + strand at 5236.406 kb on - strand at 5236.461 kb on + strand at 5236.542 kb on - strand, within BT4019 at 5236.543 kb on + strand, within BT4019 at 5236.544 kb on - strand, within BT4019 at 5236.544 kb on - strand, within BT4019 at 5236.544 kb on - strand, within BT4019 at 5236.544 kb on - strand, within BT4019 at 5236.550 kb on + strand, within BT4019 at 5236.551 kb on - strand, within BT4019 at 5236.551 kb on - strand, within BT4019 at 5236.572 kb on + strand, within BT4019 at 5236.586 kb on + strand, within BT4019 at 5236.601 kb on + strand, within BT4019 at 5236.622 kb on - strand, within BT4019 at 5236.663 kb on + strand, within BT4019 at 5236.664 kb on - strand, within BT4019
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic remove 5,234,317 + BT4015 0.76 -0.9 5,234,318 - BT4015 0.76 -1.8 5,234,320 - BT4015 0.76 -0.0 5,234,395 - BT4015 0.82 +0.4 5,234,417 + BT4015 0.84 +0.4 5,234,443 + BT4015 0.86 -2.2 5,234,444 - BT4015 0.86 -0.9 5,234,445 + BT4015 0.86 -1.0 5,234,445 + BT4015 0.86 -0.6 5,234,446 - BT4015 0.86 -1.6 5,234,453 - BT4015 0.87 -2.7 5,234,549 + -1.5 5,234,610 + -0.8 5,234,712 + BT4016 0.24 -1.1 5,234,713 - BT4016 0.24 -0.7 5,234,776 - BT4016 0.39 -0.1 5,234,829 + BT4016 0.51 -1.6 5,234,830 - BT4016 0.52 -2.8 5,234,912 + BT4016 0.71 -0.2 5,234,913 - BT4016 0.71 -2.2 5,234,913 - BT4016 0.71 -2.1 5,234,913 - BT4016 0.71 -0.7 5,234,928 + BT4016 0.75 -2.3 5,235,019 + -1.7 5,235,020 - -1.7 5,235,065 + -2.3 5,235,117 + BT4017 0.26 -1.9 5,235,181 + BT4017 0.48 -1.7 5,235,244 + BT4017 0.70 -0.0 5,235,381 + BT4018 0.14 -1.5 5,235,383 + BT4018 0.15 -2.4 5,235,483 - BT4018 0.36 -1.1 5,235,514 + BT4018 0.43 -1.4 5,236,246 + -2.1 5,236,406 - -2.4 5,236,461 + -0.5 5,236,542 - BT4019 0.23 -0.9 5,236,543 + BT4019 0.23 -0.2 5,236,544 - BT4019 0.24 +0.4 5,236,544 - BT4019 0.24 -2.4 5,236,544 - BT4019 0.24 +0.0 5,236,544 - BT4019 0.24 -1.1 5,236,550 + BT4019 0.25 +0.4 5,236,551 - BT4019 0.25 -1.3 5,236,551 - BT4019 0.25 -0.0 5,236,572 + BT4019 0.30 +2.0 5,236,586 + BT4019 0.33 +0.1 5,236,601 + BT4019 0.37 -1.5 5,236,622 - BT4019 0.41 -1.9 5,236,663 + BT4019 0.51 -1.7 5,236,664 - BT4019 0.51 -1.0
Or see this region's nucleotide sequence