Experiment: polygalacturonic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0749 and BT0750 are separated by 35 nucleotides BT0750 and BT0751 are separated by 7 nucleotides BT0751 and BT0752 are separated by 93 nucleotides BT0752 and BT0753 are separated by 76 nucleotides
BT0749: BT0749 - putative two-component system sensor histidine kinase (NCBI ptt file), at 927,935 to 932,182
BT0749
BT0750: BT0750 - hypothetical protein (NCBI ptt file), at 932,218 to 932,946
BT0750
BT0751: BT0751 - putative efflux pump component protein (NCBI ptt file), at 932,954 to 934,390
BT0751
BT0752: BT0752 - putative RNA polymerase ECF-type sigma factor (NCBI ptt file), at 934,484 to 935,071
BT0752
BT0753: BT0753 - putative anti-sigma factor (NCBI ptt file), at 935,148 to 936,173
BT0753
Position (kb) 932
933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 932.413 kb on - strand, within BT0750 at 932.455 kb on + strand, within BT0750 at 932.706 kb on + strand, within BT0750 at 932.954 kb on - strand at 933.026 kb on + strand at 933.027 kb on - strand at 933.259 kb on + strand, within BT0751 at 933.699 kb on + strand, within BT0751 at 933.701 kb on + strand, within BT0751 at 933.701 kb on + strand, within BT0751 at 933.701 kb on + strand, within BT0751 at 933.702 kb on - strand, within BT0751 at 933.737 kb on + strand, within BT0751 at 933.737 kb on + strand, within BT0751 at 934.254 kb on - strand at 934.254 kb on - strand at 934.356 kb on + strand at 934.443 kb on - strand at 934.559 kb on + strand, within BT0752 at 934.575 kb on + strand, within BT0752 at 934.576 kb on - strand, within BT0752 at 934.577 kb on + strand, within BT0752 at 934.599 kb on - strand, within BT0752 at 934.602 kb on - strand, within BT0752 at 934.606 kb on - strand, within BT0752 at 934.606 kb on - strand, within BT0752 at 934.633 kb on - strand, within BT0752 at 934.713 kb on + strand, within BT0752 at 934.726 kb on + strand, within BT0752 at 934.765 kb on - strand, within BT0752 at 934.929 kb on - strand, within BT0752 at 935.049 kb on + strand at 935.113 kb on - strand at 935.120 kb on + strand at 935.121 kb on - strand at 935.158 kb on - strand at 935.161 kb on - strand at 935.190 kb on - strand at 935.192 kb on + strand at 935.333 kb on - strand, within BT0753
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic remove 932,413 - BT0750 0.27 +0.7 932,455 + BT0750 0.33 +2.1 932,706 + BT0750 0.67 +2.1 932,954 - -0.6 933,026 + +0.1 933,027 - +2.7 933,259 + BT0751 0.21 -1.1 933,699 + BT0751 0.52 -0.5 933,701 + BT0751 0.52 -1.8 933,701 + BT0751 0.52 -0.1 933,701 + BT0751 0.52 -1.5 933,702 - BT0751 0.52 -0.7 933,737 + BT0751 0.54 -0.2 933,737 + BT0751 0.54 -2.1 934,254 - -1.2 934,254 - +0.1 934,356 + -0.5 934,443 - -0.7 934,559 + BT0752 0.13 -3.3 934,575 + BT0752 0.15 -1.2 934,576 - BT0752 0.16 -0.2 934,577 + BT0752 0.16 -1.5 934,599 - BT0752 0.20 -1.8 934,602 - BT0752 0.20 -1.5 934,606 - BT0752 0.21 +0.5 934,606 - BT0752 0.21 -0.9 934,633 - BT0752 0.25 -1.1 934,713 + BT0752 0.39 -0.2 934,726 + BT0752 0.41 +0.1 934,765 - BT0752 0.48 +0.1 934,929 - BT0752 0.76 -0.7 935,049 + -0.2 935,113 - -0.5 935,120 + -0.2 935,121 - -0.2 935,158 - -1.3 935,161 - +2.1 935,190 - -0.7 935,192 + -0.3 935,333 - BT0753 0.18 +0.5
Or see this region's nucleotide sequence