Experiment: polygalacturonic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0547 and BT0548 are separated by 57 nucleotides BT0548 and BT0549 are separated by 409 nucleotides BT0549 and BT0550 are separated by 125 nucleotides
BT0547: BT0547 - aspartate aminotransferase (NCBI ptt file), at 673,080 to 674,312
BT0547
BT0548: BT0548 - diaminopimelate epimerase (NCBI ptt file), at 674,370 to 675,173
BT0548
BT0549: BT0549 - putative thioredoxin (NCBI ptt file), at 675,583 to 675,879
BT0549
BT0550: BT0550 - putative glycerophosphodiester phosphodiesterase (NCBI ptt file), at 676,005 to 676,742
BT0550
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 673.393 kb on + strand at 673.530 kb on - strand, within BT0547 at 673.648 kb on + strand, within BT0547 at 673.699 kb on + strand, within BT0547 at 673.835 kb on - strand, within BT0547 at 673.899 kb on - strand, within BT0547 at 673.908 kb on - strand, within BT0547 at 673.909 kb on + strand, within BT0547 at 673.922 kb on + strand, within BT0547 at 673.943 kb on + strand, within BT0547 at 674.055 kb on + strand, within BT0547 at 674.058 kb on - strand, within BT0547 at 674.060 kb on + strand, within BT0547 at 674.080 kb on + strand, within BT0547 at 674.111 kb on + strand, within BT0547 at 674.118 kb on - strand, within BT0547 at 674.156 kb on + strand, within BT0547 at 674.312 kb on + strand at 674.313 kb on - strand at 674.347 kb on - strand at 674.351 kb on - strand at 674.357 kb on + strand at 674.364 kb on + strand at 674.473 kb on - strand, within BT0548 at 674.475 kb on + strand, within BT0548 at 674.622 kb on + strand, within BT0548 at 674.696 kb on + strand, within BT0548 at 674.808 kb on + strand, within BT0548 at 674.809 kb on - strand, within BT0548 at 674.914 kb on + strand, within BT0548 at 675.118 kb on + strand at 675.119 kb on - strand at 675.120 kb on + strand at 675.500 kb on + strand at 675.501 kb on - strand at 675.505 kb on + strand at 675.668 kb on - strand, within BT0549 at 675.694 kb on - strand, within BT0549 at 675.697 kb on + strand, within BT0549 at 675.765 kb on + strand, within BT0549 at 675.828 kb on - strand, within BT0549 at 675.860 kb on + strand at 675.860 kb on + strand at 675.899 kb on + strand at 675.914 kb on + strand at 675.914 kb on + strand at 675.949 kb on - strand at 675.953 kb on - strand at 676.002 kb on + strand at 676.094 kb on + strand, within BT0550 at 676.095 kb on - strand, within BT0550 at 676.107 kb on + strand, within BT0550
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic remove 673,393 + +1.5 673,530 - BT0547 0.36 -2.0 673,648 + BT0547 0.46 -1.3 673,699 + BT0547 0.50 -1.9 673,835 - BT0547 0.61 +0.3 673,899 - BT0547 0.66 -0.5 673,908 - BT0547 0.67 -2.2 673,909 + BT0547 0.67 -0.8 673,922 + BT0547 0.68 -0.2 673,943 + BT0547 0.70 -0.9 674,055 + BT0547 0.79 +1.8 674,058 - BT0547 0.79 +2.1 674,060 + BT0547 0.79 +0.5 674,080 + BT0547 0.81 -0.3 674,111 + BT0547 0.84 +0.3 674,118 - BT0547 0.84 -1.3 674,156 + BT0547 0.87 -1.4 674,312 + -0.9 674,313 - +0.1 674,347 - +2.1 674,351 - -0.5 674,357 + +0.7 674,364 + -2.0 674,473 - BT0548 0.13 -1.4 674,475 + BT0548 0.13 +1.1 674,622 + BT0548 0.31 -3.0 674,696 + BT0548 0.41 -1.2 674,808 + BT0548 0.54 +0.5 674,809 - BT0548 0.55 -0.7 674,914 + BT0548 0.68 +0.1 675,118 + -2.5 675,119 - -1.1 675,120 + +1.1 675,500 + -0.5 675,501 - -0.2 675,505 + -1.8 675,668 - BT0549 0.29 -1.1 675,694 - BT0549 0.37 -0.7 675,697 + BT0549 0.38 -0.2 675,765 + BT0549 0.61 -0.2 675,828 - BT0549 0.82 -1.4 675,860 + -0.7 675,860 + -1.7 675,899 + -0.2 675,914 + -1.2 675,914 + +1.1 675,949 - -1.6 675,953 - -2.2 676,002 + -1.2 676,094 + BT0550 0.12 -1.0 676,095 - BT0550 0.12 -1.4 676,107 + BT0550 0.14 +0.5
Or see this region's nucleotide sequence