Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0311

Experiment: polygalacturonic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0309 and BT0310 overlap by 17 nucleotidesBT0310 and BT0311 are separated by 86 nucleotidesBT0311 and BT0312 are separated by 37 nucleotides BT0309: BT0309 - Dihydrolipoamide dehydrogenase (NCBI ptt file), at 371,489 to 372,832 BT0309 BT0310: BT0310 - lipoate-protein ligase A (NCBI ptt file), at 372,816 to 373,535 BT0310 BT0311: BT0311 - lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (NCBI ptt file), at 373,622 to 374,992 BT0311 BT0312: BT0312 - 2-oxoisovalerate dehydrogenase beta subunit (NCBI ptt file), at 375,030 to 377,066 BT0312 Position (kb) 373 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 372.649 kb on - strand, within BT0309at 372.661 kb on - strand, within BT0309at 372.694 kb on + strand, within BT0309at 372.695 kb on - strand, within BT0309at 372.695 kb on - strand, within BT0309at 372.739 kb on - strandat 372.797 kb on - strandat 372.932 kb on - strand, within BT0310at 372.932 kb on - strand, within BT0310at 372.956 kb on - strand, within BT0310at 373.003 kb on + strand, within BT0310at 373.033 kb on + strand, within BT0310at 373.033 kb on + strand, within BT0310at 373.034 kb on - strand, within BT0310at 373.034 kb on - strand, within BT0310at 373.035 kb on + strand, within BT0310at 373.172 kb on + strand, within BT0310at 373.172 kb on + strand, within BT0310at 373.177 kb on - strand, within BT0310at 373.177 kb on - strand, within BT0310at 373.177 kb on - strand, within BT0310at 373.276 kb on + strand, within BT0310at 373.332 kb on + strand, within BT0310at 373.333 kb on - strand, within BT0310at 373.378 kb on - strand, within BT0310at 373.820 kb on - strand, within BT0311at 373.830 kb on + strand, within BT0311at 373.851 kb on + strand, within BT0311at 373.851 kb on + strand, within BT0311at 373.855 kb on + strand, within BT0311at 373.855 kb on + strand, within BT0311at 373.983 kb on - strand, within BT0311at 374.089 kb on - strand, within BT0311at 374.146 kb on - strand, within BT0311at 374.165 kb on - strand, within BT0311at 374.174 kb on - strand, within BT0311at 374.290 kb on + strand, within BT0311at 374.291 kb on - strand, within BT0311at 374.348 kb on - strand, within BT0311at 374.474 kb on + strand, within BT0311at 374.476 kb on + strand, within BT0311at 374.477 kb on - strand, within BT0311at 374.492 kb on + strand, within BT0311at 374.520 kb on - strand, within BT0311at 374.667 kb on + strand, within BT0311at 374.668 kb on - strand, within BT0311at 374.671 kb on + strand, within BT0311at 374.671 kb on + strand, within BT0311at 374.674 kb on - strand, within BT0311at 374.734 kb on + strand, within BT0311at 374.740 kb on + strand, within BT0311at 374.740 kb on + strand, within BT0311at 374.741 kb on - strand, within BT0311at 374.828 kb on - strand, within BT0311at 374.869 kb on + strandat 374.888 kb on - strandat 374.910 kb on - strandat 374.922 kb on + strandat 374.932 kb on + strandat 375.014 kb on - strandat 375.043 kb on - strandat 375.049 kb on + strandat 375.348 kb on - strand, within BT0312at 375.348 kb on - strand, within BT0312at 375.380 kb on + strand, within BT0312at 375.449 kb on - strand, within BT0312at 375.449 kb on - strand, within BT0312at 375.451 kb on - strand, within BT0312at 375.451 kb on - strand, within BT0312at 375.497 kb on + strand, within BT0312at 375.525 kb on - strand, within BT0312at 375.666 kb on - strand, within BT0312at 375.669 kb on + strand, within BT0312at 375.727 kb on - strand, within BT0312at 375.758 kb on - strand, within BT0312at 375.807 kb on - strand, within BT0312at 375.838 kb on - strand, within BT0312at 375.890 kb on + strand, within BT0312at 375.947 kb on - strand, within BT0312

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic
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372,649 - BT0309 0.86 -1.7
372,661 - BT0309 0.87 -0.6
372,694 + BT0309 0.90 +1.0
372,695 - BT0309 0.90 -0.1
372,695 - BT0309 0.90 +1.0
372,739 - +1.0
372,797 - -3.4
372,932 - BT0310 0.16 -1.7
372,932 - BT0310 0.16 -0.3
372,956 - BT0310 0.19 +1.0
373,003 + BT0310 0.26 -1.0
373,033 + BT0310 0.30 +0.0
373,033 + BT0310 0.30 -1.6
373,034 - BT0310 0.30 -1.4
373,034 - BT0310 0.30 -1.4
373,035 + BT0310 0.30 +2.0
373,172 + BT0310 0.49 -1.5
373,172 + BT0310 0.49 -2.5
373,177 - BT0310 0.50 -0.6
373,177 - BT0310 0.50 -0.6
373,177 - BT0310 0.50 -1.9
373,276 + BT0310 0.64 -2.2
373,332 + BT0310 0.72 +0.0
373,333 - BT0310 0.72 +1.3
373,378 - BT0310 0.78 -1.4
373,820 - BT0311 0.14 -1.3
373,830 + BT0311 0.15 -0.3
373,851 + BT0311 0.17 -0.6
373,851 + BT0311 0.17 -2.4
373,855 + BT0311 0.17 -1.4
373,855 + BT0311 0.17 -0.8
373,983 - BT0311 0.26 -2.1
374,089 - BT0311 0.34 -0.9
374,146 - BT0311 0.38 +2.0
374,165 - BT0311 0.40 -2.0
374,174 - BT0311 0.40 -1.6
374,290 + BT0311 0.49 -2.1
374,291 - BT0311 0.49 -0.8
374,348 - BT0311 0.53 -1.1
374,474 + BT0311 0.62 -3.4
374,476 + BT0311 0.62 -2.1
374,477 - BT0311 0.62 -2.0
374,492 + BT0311 0.63 -1.0
374,520 - BT0311 0.65 -2.1
374,667 + BT0311 0.76 -1.1
374,668 - BT0311 0.76 -1.6
374,671 + BT0311 0.77 -0.1
374,671 + BT0311 0.77 -1.2
374,674 - BT0311 0.77 -0.6
374,734 + BT0311 0.81 -1.4
374,740 + BT0311 0.82 -1.0
374,740 + BT0311 0.82 -1.0
374,741 - BT0311 0.82 +1.0
374,828 - BT0311 0.88 -0.9
374,869 + -1.1
374,888 - -1.2
374,910 - -1.0
374,922 + -1.4
374,932 + -0.8
375,014 - +0.0
375,043 - -0.2
375,049 + -1.6
375,348 - BT0312 0.16 +0.2
375,348 - BT0312 0.16 -0.3
375,380 + BT0312 0.17 +1.0
375,449 - BT0312 0.21 -1.5
375,449 - BT0312 0.21 -1.4
375,451 - BT0312 0.21 -0.4
375,451 - BT0312 0.21 -1.7
375,497 + BT0312 0.23 +0.0
375,525 - BT0312 0.24 -1.4
375,666 - BT0312 0.31 +0.0
375,669 + BT0312 0.31 +1.0
375,727 - BT0312 0.34 -1.1
375,758 - BT0312 0.36 -0.6
375,807 - BT0312 0.38 -1.1
375,838 - BT0312 0.40 -1.9
375,890 + BT0312 0.42 -1.3
375,947 - BT0312 0.45 -2.4

Or see this region's nucleotide sequence