Strain Fitness in Sinorhizobium meliloti 1021 around SMc05017

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03301 and SMc05017 are separated by 735 nucleotidesSMc05017 and SMc05018 are separated by 89 nucleotides SMc03301: SMc03301 - transposase number 1 for insertion sequence ISRM26, at 3,415,647 to 3,416,033 SMc03301 SMc05017: SMc05017 - transposase, at 3,416,769 to 3,417,167 SMc05017 SMc05018: SMc05018 - DNA or RNA helicase, at 3,417,257 to 3,419,215 SMc05018 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3416.086 kb on + strandat 3416.086 kb on + strandat 3416.108 kb on + strandat 3416.109 kb on - strandat 3416.132 kb on - strandat 3416.152 kb on - strandat 3416.517 kb on + strandat 3416.571 kb on + strandat 3416.572 kb on - strandat 3416.586 kb on + strandat 3416.716 kb on + strandat 3416.716 kb on + strandat 3416.716 kb on + strandat 3416.716 kb on + strandat 3416.717 kb on - strandat 3416.717 kb on - strandat 3416.744 kb on - strandat 3416.783 kb on + strandat 3416.855 kb on + strand, within SMc05017at 3416.856 kb on - strand, within SMc05017at 3416.972 kb on + strand, within SMc05017at 3416.973 kb on - strand, within SMc05017at 3416.984 kb on - strand, within SMc05017at 3416.999 kb on + strand, within SMc05017at 3417.011 kb on + strand, within SMc05017at 3417.012 kb on - strand, within SMc05017at 3417.061 kb on + strand, within SMc05017at 3417.073 kb on + strand, within SMc05017at 3417.073 kb on + strand, within SMc05017at 3417.103 kb on + strand, within SMc05017at 3417.155 kb on - strandat 3417.165 kb on + strandat 3417.165 kb on + strandat 3417.165 kb on + strandat 3417.165 kb on + strandat 3417.259 kb on - strandat 3417.319 kb on + strandat 3417.322 kb on + strandat 3417.323 kb on - strandat 3417.323 kb on - strandat 3417.375 kb on - strandat 3417.493 kb on + strand, within SMc05018at 3417.494 kb on - strand, within SMc05018at 3417.514 kb on + strand, within SMc05018at 3417.515 kb on - strand, within SMc05018at 3417.515 kb on - strand, within SMc05018at 3417.515 kb on - strand, within SMc05018at 3417.526 kb on - strand, within SMc05018at 3417.530 kb on + strand, within SMc05018at 3417.632 kb on + strand, within SMc05018at 3417.633 kb on - strand, within SMc05018at 3417.718 kb on + strand, within SMc05018at 3417.763 kb on - strand, within SMc05018at 3417.895 kb on + strand, within SMc05018at 3418.149 kb on + strand, within SMc05018at 3418.150 kb on - strand, within SMc05018

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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3,416,086 + +0.2
3,416,086 + -2.5
3,416,108 + +0.6
3,416,109 - -0.6
3,416,132 - +0.3
3,416,152 - -1.2
3,416,517 + -0.2
3,416,571 + -1.7
3,416,572 - +0.2
3,416,586 + +0.5
3,416,716 + -1.0
3,416,716 + -0.6
3,416,716 + -1.5
3,416,716 + -0.2
3,416,717 - +0.8
3,416,717 - -0.3
3,416,744 - +0.3
3,416,783 + +1.1
3,416,855 + SMc05017 0.22 +2.5
3,416,856 - SMc05017 0.22 +0.6
3,416,972 + SMc05017 0.51 -2.0
3,416,973 - SMc05017 0.51 +0.9
3,416,984 - SMc05017 0.54 +0.9
3,416,999 + SMc05017 0.58 +0.1
3,417,011 + SMc05017 0.61 +1.5
3,417,012 - SMc05017 0.61 +1.2
3,417,061 + SMc05017 0.73 +0.1
3,417,073 + SMc05017 0.76 +1.3
3,417,073 + SMc05017 0.76 +0.9
3,417,103 + SMc05017 0.84 +0.3
3,417,155 - -1.0
3,417,165 + -1.5
3,417,165 + +1.1
3,417,165 + +0.5
3,417,165 + -0.1
3,417,259 - -0.6
3,417,319 + +0.3
3,417,322 + -0.0
3,417,323 - -0.5
3,417,323 - -3.0
3,417,375 - -0.0
3,417,493 + SMc05018 0.12 +0.6
3,417,494 - SMc05018 0.12 +0.1
3,417,514 + SMc05018 0.13 -1.6
3,417,515 - SMc05018 0.13 -1.3
3,417,515 - SMc05018 0.13 -1.8
3,417,515 - SMc05018 0.13 -2.0
3,417,526 - SMc05018 0.14 +0.5
3,417,530 + SMc05018 0.14 -0.7
3,417,632 + SMc05018 0.19 +0.4
3,417,633 - SMc05018 0.19 -1.3
3,417,718 + SMc05018 0.24 +0.3
3,417,763 - SMc05018 0.26 -0.2
3,417,895 + SMc05018 0.33 +0.3
3,418,149 + SMc05018 0.46 +1.5
3,418,150 - SMc05018 0.46 +0.6

Or see this region's nucleotide sequence