Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03301 and SMc05017 are separated by 735 nucleotides SMc05017 and SMc05018 are separated by 89 nucleotides
SMc03301: SMc03301 - transposase number 1 for insertion sequence ISRM26, at 3,415,647 to 3,416,033
SMc03301
SMc05017: SMc05017 - transposase, at 3,416,769 to 3,417,167
SMc05017
SMc05018: SMc05018 - DNA or RNA helicase, at 3,417,257 to 3,419,215
SMc05018
Position (kb)
3416
3417
3418 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3416.086 kb on + strand at 3416.086 kb on + strand at 3416.108 kb on + strand at 3416.109 kb on - strand at 3416.132 kb on - strand at 3416.152 kb on - strand at 3416.517 kb on + strand at 3416.571 kb on + strand at 3416.572 kb on - strand at 3416.586 kb on + strand at 3416.716 kb on + strand at 3416.716 kb on + strand at 3416.716 kb on + strand at 3416.716 kb on + strand at 3416.717 kb on - strand at 3416.717 kb on - strand at 3416.744 kb on - strand at 3416.783 kb on + strand at 3416.855 kb on + strand, within SMc05017 at 3416.856 kb on - strand, within SMc05017 at 3416.972 kb on + strand, within SMc05017 at 3416.973 kb on - strand, within SMc05017 at 3416.984 kb on - strand, within SMc05017 at 3416.999 kb on + strand, within SMc05017 at 3417.011 kb on + strand, within SMc05017 at 3417.012 kb on - strand, within SMc05017 at 3417.061 kb on + strand, within SMc05017 at 3417.073 kb on + strand, within SMc05017 at 3417.073 kb on + strand, within SMc05017 at 3417.103 kb on + strand, within SMc05017 at 3417.155 kb on - strand at 3417.165 kb on + strand at 3417.165 kb on + strand at 3417.165 kb on + strand at 3417.165 kb on + strand at 3417.259 kb on - strand at 3417.319 kb on + strand at 3417.322 kb on + strand at 3417.323 kb on - strand at 3417.323 kb on - strand at 3417.375 kb on - strand at 3417.493 kb on + strand, within SMc05018 at 3417.494 kb on - strand, within SMc05018 at 3417.514 kb on + strand, within SMc05018 at 3417.515 kb on - strand, within SMc05018 at 3417.515 kb on - strand, within SMc05018 at 3417.515 kb on - strand, within SMc05018 at 3417.526 kb on - strand, within SMc05018 at 3417.530 kb on + strand, within SMc05018 at 3417.632 kb on + strand, within SMc05018 at 3417.633 kb on - strand, within SMc05018 at 3417.718 kb on + strand, within SMc05018 at 3417.763 kb on - strand, within SMc05018 at 3417.895 kb on + strand, within SMc05018 at 3418.149 kb on + strand, within SMc05018 at 3418.150 kb on - strand, within SMc05018
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 3,416,086 + +0.2 3,416,086 + -2.5 3,416,108 + +0.6 3,416,109 - -0.6 3,416,132 - +0.3 3,416,152 - -1.2 3,416,517 + -0.2 3,416,571 + -1.7 3,416,572 - +0.2 3,416,586 + +0.5 3,416,716 + -1.0 3,416,716 + -0.6 3,416,716 + -1.5 3,416,716 + -0.2 3,416,717 - +0.8 3,416,717 - -0.3 3,416,744 - +0.3 3,416,783 + +1.1 3,416,855 + SMc05017 0.22 +2.5 3,416,856 - SMc05017 0.22 +0.6 3,416,972 + SMc05017 0.51 -2.0 3,416,973 - SMc05017 0.51 +0.9 3,416,984 - SMc05017 0.54 +0.9 3,416,999 + SMc05017 0.58 +0.1 3,417,011 + SMc05017 0.61 +1.5 3,417,012 - SMc05017 0.61 +1.2 3,417,061 + SMc05017 0.73 +0.1 3,417,073 + SMc05017 0.76 +1.3 3,417,073 + SMc05017 0.76 +0.9 3,417,103 + SMc05017 0.84 +0.3 3,417,155 - -1.0 3,417,165 + -1.5 3,417,165 + +1.1 3,417,165 + +0.5 3,417,165 + -0.1 3,417,259 - -0.6 3,417,319 + +0.3 3,417,322 + -0.0 3,417,323 - -0.5 3,417,323 - -3.0 3,417,375 - -0.0 3,417,493 + SMc05018 0.12 +0.6 3,417,494 - SMc05018 0.12 +0.1 3,417,514 + SMc05018 0.13 -1.6 3,417,515 - SMc05018 0.13 -1.3 3,417,515 - SMc05018 0.13 -1.8 3,417,515 - SMc05018 0.13 -2.0 3,417,526 - SMc05018 0.14 +0.5 3,417,530 + SMc05018 0.14 -0.7 3,417,632 + SMc05018 0.19 +0.4 3,417,633 - SMc05018 0.19 -1.3 3,417,718 + SMc05018 0.24 +0.3 3,417,763 - SMc05018 0.26 -0.2 3,417,895 + SMc05018 0.33 +0.3 3,418,149 + SMc05018 0.46 +1.5 3,418,150 - SMc05018 0.46 +0.6
Or see this region's nucleotide sequence