Strain Fitness in Sinorhizobium meliloti 1021 around SMc04287

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04283 and SMc04287 overlap by 4 nucleotidesSMc04287 and SMc04289 are separated by 40 nucleotides SMc04283: SMc04283 - transmembrane protein, at 2,206,649 to 2,208,388 SMc04283 SMc04287: SMc04287 - hypothetical protein, at 2,208,385 to 2,209,086 SMc04287 SMc04289: SMc04289 - hypothetical protein, at 2,209,127 to 2,210,266 SMc04289 Position (kb) 2208 2209 2210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2207.394 kb on + strand, within SMc04283at 2207.394 kb on + strand, within SMc04283at 2207.395 kb on - strand, within SMc04283at 2207.395 kb on - strand, within SMc04283at 2207.511 kb on + strand, within SMc04283at 2207.511 kb on + strand, within SMc04283at 2207.511 kb on + strand, within SMc04283at 2207.512 kb on - strand, within SMc04283at 2207.512 kb on - strand, within SMc04283at 2207.512 kb on - strand, within SMc04283at 2207.512 kb on - strand, within SMc04283at 2207.682 kb on + strand, within SMc04283at 2207.682 kb on + strand, within SMc04283at 2207.683 kb on - strand, within SMc04283at 2207.683 kb on - strand, within SMc04283at 2207.683 kb on - strand, within SMc04283at 2207.720 kb on + strand, within SMc04283at 2207.757 kb on + strand, within SMc04283at 2207.788 kb on - strand, within SMc04283at 2207.796 kb on + strand, within SMc04283at 2207.797 kb on - strand, within SMc04283at 2207.958 kb on + strand, within SMc04283at 2208.032 kb on + strand, within SMc04283at 2208.111 kb on + strand, within SMc04283at 2208.111 kb on + strand, within SMc04283at 2208.111 kb on + strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.112 kb on - strand, within SMc04283at 2208.150 kb on + strand, within SMc04283at 2208.150 kb on + strand, within SMc04283at 2208.150 kb on + strand, within SMc04283at 2208.207 kb on + strand, within SMc04283at 2208.267 kb on + strandat 2208.267 kb on + strandat 2208.268 kb on - strandat 2208.268 kb on - strandat 2208.268 kb on - strandat 2208.268 kb on - strandat 2208.276 kb on + strandat 2208.531 kb on + strand, within SMc04287at 2208.532 kb on - strand, within SMc04287at 2208.641 kb on + strand, within SMc04287at 2208.641 kb on + strand, within SMc04287at 2208.642 kb on - strand, within SMc04287at 2208.645 kb on - strand, within SMc04287at 2208.645 kb on - strand, within SMc04287at 2208.708 kb on - strand, within SMc04287at 2208.713 kb on + strand, within SMc04287at 2208.722 kb on + strand, within SMc04287at 2208.722 kb on + strand, within SMc04287at 2208.722 kb on + strand, within SMc04287at 2208.722 kb on + strand, within SMc04287at 2208.762 kb on - strand, within SMc04287at 2208.762 kb on - strand, within SMc04287at 2208.762 kb on - strandat 2208.882 kb on - strand, within SMc04287at 2208.882 kb on - strand, within SMc04287at 2208.932 kb on + strand, within SMc04287at 2208.932 kb on + strand, within SMc04287at 2208.933 kb on - strand, within SMc04287at 2209.299 kb on + strand, within SMc04289at 2209.300 kb on - strand, within SMc04289at 2209.300 kb on - strand, within SMc04289at 2209.341 kb on + strand, within SMc04289at 2209.390 kb on - strand, within SMc04289at 2209.445 kb on + strand, within SMc04289at 2209.446 kb on - strand, within SMc04289at 2209.527 kb on + strand, within SMc04289at 2209.528 kb on - strand, within SMc04289at 2209.528 kb on - strand, within SMc04289at 2209.594 kb on + strand, within SMc04289at 2209.700 kb on - strand, within SMc04289at 2209.717 kb on + strand, within SMc04289at 2209.792 kb on - strand, within SMc04289at 2209.861 kb on - strand, within SMc04289at 2209.861 kb on - strand, within SMc04289at 2209.945 kb on - strand, within SMc04289at 2209.945 kb on - strand, within SMc04289at 2209.950 kb on + strand, within SMc04289at 2209.951 kb on - strand, within SMc04289at 2209.951 kb on - strand, within SMc04289at 2209.951 kb on - strand, within SMc04289at 2209.951 kb on - strand, within SMc04289

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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2,207,394 + SMc04283 0.43 -0.5
2,207,394 + SMc04283 0.43 -0.3
2,207,395 - SMc04283 0.43 +1.5
2,207,395 - SMc04283 0.43 +0.8
2,207,511 + SMc04283 0.50 -1.1
2,207,511 + SMc04283 0.50 +1.0
2,207,511 + SMc04283 0.50 +0.3
2,207,512 - SMc04283 0.50 -0.7
2,207,512 - SMc04283 0.50 -2.0
2,207,512 - SMc04283 0.50 +0.1
2,207,512 - SMc04283 0.50 -0.4
2,207,682 + SMc04283 0.59 -0.4
2,207,682 + SMc04283 0.59 -0.9
2,207,683 - SMc04283 0.59 -0.6
2,207,683 - SMc04283 0.59 -0.1
2,207,683 - SMc04283 0.59 +0.7
2,207,720 + SMc04283 0.62 -0.8
2,207,757 + SMc04283 0.64 +0.3
2,207,788 - SMc04283 0.65 -0.6
2,207,796 + SMc04283 0.66 -1.1
2,207,797 - SMc04283 0.66 +2.7
2,207,958 + SMc04283 0.75 -0.2
2,208,032 + SMc04283 0.79 -0.3
2,208,111 + SMc04283 0.84 -0.8
2,208,111 + SMc04283 0.84 -0.9
2,208,111 + SMc04283 0.84 -0.8
2,208,112 - SMc04283 0.84 +1.5
2,208,112 - SMc04283 0.84 +0.1
2,208,112 - SMc04283 0.84 +2.6
2,208,112 - SMc04283 0.84 -0.0
2,208,112 - SMc04283 0.84 +1.1
2,208,112 - SMc04283 0.84 -3.0
2,208,150 + SMc04283 0.86 +0.3
2,208,150 + SMc04283 0.86 -0.2
2,208,150 + SMc04283 0.86 +0.4
2,208,207 + SMc04283 0.90 -1.4
2,208,267 + -2.2
2,208,267 + +0.9
2,208,268 - +0.8
2,208,268 - +1.8
2,208,268 - +0.0
2,208,268 - +0.7
2,208,276 + -0.5
2,208,531 + SMc04287 0.21 -0.9
2,208,532 - SMc04287 0.21 +0.4
2,208,641 + SMc04287 0.36 -0.6
2,208,641 + SMc04287 0.36 +0.7
2,208,642 - SMc04287 0.37 +0.2
2,208,645 - SMc04287 0.37 +1.0
2,208,645 - SMc04287 0.37 -0.1
2,208,708 - SMc04287 0.46 +1.3
2,208,713 + SMc04287 0.47 +1.3
2,208,722 + SMc04287 0.48 +1.5
2,208,722 + SMc04287 0.48 -2.6
2,208,722 + SMc04287 0.48 -0.7
2,208,722 + SMc04287 0.48 -0.6
2,208,762 - SMc04287 0.54 -0.2
2,208,762 - SMc04287 0.54 +0.5
2,208,762 - +3.7
2,208,882 - SMc04287 0.71 +1.0
2,208,882 - SMc04287 0.71 -1.7
2,208,932 + SMc04287 0.78 -0.8
2,208,932 + SMc04287 0.78 +0.3
2,208,933 - SMc04287 0.78 -0.2
2,209,299 + SMc04289 0.15 -1.9
2,209,300 - SMc04289 0.15 -1.5
2,209,300 - SMc04289 0.15 +0.5
2,209,341 + SMc04289 0.19 -0.6
2,209,390 - SMc04289 0.23 -0.1
2,209,445 + SMc04289 0.28 -0.2
2,209,446 - SMc04289 0.28 +2.5
2,209,527 + SMc04289 0.35 +1.2
2,209,528 - SMc04289 0.35 +0.1
2,209,528 - SMc04289 0.35 +0.5
2,209,594 + SMc04289 0.41 -0.1
2,209,700 - SMc04289 0.50 +1.1
2,209,717 + SMc04289 0.52 -1.4
2,209,792 - SMc04289 0.58 -0.1
2,209,861 - SMc04289 0.64 -0.0
2,209,861 - SMc04289 0.64 +0.4
2,209,945 - SMc04289 0.72 +0.4
2,209,945 - SMc04289 0.72 -2.6
2,209,950 + SMc04289 0.72 -1.7
2,209,951 - SMc04289 0.72 -2.4
2,209,951 - SMc04289 0.72 +0.5
2,209,951 - SMc04289 0.72 -0.5
2,209,951 - SMc04289 0.72 -4.5

Or see this region's nucleotide sequence