Strain Fitness in Sinorhizobium meliloti 1021 around SMc04132

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04133 and SMc04132 are separated by 3 nucleotidesSMc04132 and SMc04131 are separated by 10 nucleotides SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968 SMc04133 SMc04132: SMc04132 - hypothetical protein, at 139,972 to 141,135 SMc04132 SMc04131: SMc04131 - hypothetical protein, at 141,146 to 142,561 SMc04131 Position (kb) 139 140 141 142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 139.011 kb on + strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.142 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.529 kb on - strand, within SMc04133at 139.593 kb on + strand, within SMc04133at 139.594 kb on - strand, within SMc04133at 139.762 kb on + strand, within SMc04133at 140.015 kb on - strandat 140.023 kb on - strandat 140.217 kb on + strand, within SMc04132at 140.383 kb on + strand, within SMc04132at 140.384 kb on - strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.491 kb on + strand, within SMc04132at 140.491 kb on + strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.726 kb on - strand, within SMc04132at 140.746 kb on + strand, within SMc04132at 140.747 kb on - strand, within SMc04132at 140.747 kb on - strand, within SMc04132at 140.936 kb on - strand, within SMc04132at 140.976 kb on - strand, within SMc04132at 140.976 kb on - strand, within SMc04132at 141.522 kb on - strand, within SMc04131at 141.547 kb on + strand, within SMc04131at 141.747 kb on + strand, within SMc04131at 141.809 kb on + strand, within SMc04131at 141.911 kb on + strand, within SMc04131at 141.911 kb on + strand, within SMc04131at 141.911 kb on + strand, within SMc04131at 141.912 kb on - strand, within SMc04131at 141.912 kb on - strand, within SMc04131at 141.913 kb on + strand, within SMc04131at 141.914 kb on - strand, within SMc04131at 141.914 kb on - strand, within SMc04131

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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139,011 + SMc04133 0.17 -1.8
139,012 - SMc04133 0.17 +3.3
139,012 - SMc04133 0.17 +1.8
139,012 - SMc04133 0.17 -3.0
139,142 - SMc04133 0.28 -0.7
139,436 - SMc04133 0.54 +1.8
139,436 - SMc04133 0.54 +0.3
139,529 - SMc04133 0.62 -1.6
139,593 + SMc04133 0.67 -0.1
139,594 - SMc04133 0.67 +0.3
139,762 + SMc04133 0.82 -0.1
140,015 - -2.0
140,023 - -0.2
140,217 + SMc04132 0.21 +0.3
140,383 + SMc04132 0.35 +0.4
140,384 - SMc04132 0.35 -0.6
140,479 + SMc04132 0.44 +1.0
140,479 + SMc04132 0.44 +1.4
140,479 + SMc04132 0.44 -0.6
140,480 - SMc04132 0.44 -0.7
140,480 - SMc04132 0.44 +0.3
140,480 - SMc04132 0.44 +0.3
140,480 - SMc04132 0.44 +0.6
140,491 + SMc04132 0.45 -0.1
140,491 + SMc04132 0.45 -2.4
140,492 - SMc04132 0.45 +0.0
140,492 - SMc04132 0.45 -0.6
140,492 - SMc04132 0.45 +1.1
140,726 - SMc04132 0.65 +0.5
140,746 + SMc04132 0.66 +0.7
140,747 - SMc04132 0.67 +0.1
140,747 - SMc04132 0.67 -0.5
140,936 - SMc04132 0.83 +0.1
140,976 - SMc04132 0.86 -1.6
140,976 - SMc04132 0.86 -0.4
141,522 - SMc04131 0.27 -0.2
141,547 + SMc04131 0.28 +0.0
141,747 + SMc04131 0.42 -0.6
141,809 + SMc04131 0.47 -0.3
141,911 + SMc04131 0.54 -0.7
141,911 + SMc04131 0.54 +1.3
141,911 + SMc04131 0.54 -0.6
141,912 - SMc04131 0.54 -0.5
141,912 - SMc04131 0.54 -2.0
141,913 + SMc04131 0.54 -2.3
141,914 - SMc04131 0.54 -2.7
141,914 - SMc04131 0.54 -0.7

Or see this region's nucleotide sequence