Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04090 and SMc04091 overlap by 1 nucleotides SMc04091 and SMc04092 are separated by 130 nucleotides SMc04092 and SMc04093 are separated by 244 nucleotides
SMc04090: SMc04090 - sun protein, at 3,631,752 to 3,633,164
SMc04090
SMc04091: SMc04091 - heat shock protein HtpX, at 3,633,164 to 3,634,123
SMc04091
SMc04092: SMc04092 - hypothetical protein, at 3,634,254 to 3,634,508
SMc04092
SMc04093: SMc04093 - acetyl-CoA synthetase, at 3,634,753 to 3,636,702
SMc04093
Position (kb)
3633
3634
3635 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3632.547 kb on + strand, within SMc04090 at 3632.590 kb on + strand, within SMc04090 at 3632.882 kb on + strand, within SMc04090 at 3632.957 kb on - strand, within SMc04090 at 3633.150 kb on - strand at 3633.247 kb on + strand at 3633.388 kb on + strand, within SMc04091 at 3633.388 kb on + strand, within SMc04091 at 3633.388 kb on + strand, within SMc04091 at 3633.389 kb on - strand, within SMc04091 at 3633.492 kb on - strand, within SMc04091 at 3633.492 kb on - strand, within SMc04091 at 3633.520 kb on - strand, within SMc04091 at 3633.529 kb on + strand, within SMc04091 at 3633.529 kb on + strand, within SMc04091 at 3633.530 kb on - strand, within SMc04091 at 3633.549 kb on - strand, within SMc04091 at 3633.762 kb on + strand, within SMc04091 at 3633.916 kb on - strand, within SMc04091 at 3633.919 kb on - strand, within SMc04091 at 3634.059 kb on + strand at 3634.060 kb on - strand at 3634.060 kb on - strand at 3634.251 kb on + strand at 3634.251 kb on + strand at 3634.251 kb on + strand at 3634.251 kb on + strand at 3634.252 kb on - strand at 3634.252 kb on - strand at 3634.253 kb on + strand at 3634.253 kb on + strand at 3634.253 kb on + strand at 3634.264 kb on + strand at 3634.284 kb on - strand, within SMc04092 at 3634.421 kb on + strand, within SMc04092 at 3634.422 kb on - strand, within SMc04092 at 3634.593 kb on + strand at 3634.593 kb on + strand at 3634.594 kb on - strand at 3634.642 kb on + strand at 3634.643 kb on - strand at 3634.740 kb on - strand at 3635.024 kb on + strand, within SMc04093 at 3635.024 kb on + strand, within SMc04093 at 3635.024 kb on + strand, within SMc04093 at 3635.025 kb on - strand, within SMc04093
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 3,632,547 + SMc04090 0.56 -0.3 3,632,590 + SMc04090 0.59 -1.7 3,632,882 + SMc04090 0.80 +0.3 3,632,957 - SMc04090 0.85 +0.3 3,633,150 - -0.4 3,633,247 + -1.8 3,633,388 + SMc04091 0.23 +1.3 3,633,388 + SMc04091 0.23 +1.1 3,633,388 + SMc04091 0.23 -0.8 3,633,389 - SMc04091 0.23 -1.8 3,633,492 - SMc04091 0.34 -0.7 3,633,492 - SMc04091 0.34 -0.0 3,633,520 - SMc04091 0.37 +0.3 3,633,529 + SMc04091 0.38 -0.6 3,633,529 + SMc04091 0.38 -1.5 3,633,530 - SMc04091 0.38 -0.0 3,633,549 - SMc04091 0.40 -0.1 3,633,762 + SMc04091 0.62 -0.5 3,633,916 - SMc04091 0.78 +0.6 3,633,919 - SMc04091 0.79 -1.7 3,634,059 + +0.2 3,634,060 - +0.2 3,634,060 - -3.2 3,634,251 + +0.6 3,634,251 + -0.1 3,634,251 + -0.4 3,634,251 + +0.2 3,634,252 - +0.2 3,634,252 - -0.3 3,634,253 + +0.4 3,634,253 + +1.1 3,634,253 + +1.5 3,634,264 + +0.6 3,634,284 - SMc04092 0.12 +1.3 3,634,421 + SMc04092 0.65 -0.7 3,634,422 - SMc04092 0.66 +2.0 3,634,593 + +0.5 3,634,593 + +0.6 3,634,594 - -0.8 3,634,642 + -0.5 3,634,643 - +1.1 3,634,740 - -0.6 3,635,024 + SMc04093 0.14 -1.2 3,635,024 + SMc04093 0.14 +0.0 3,635,024 + SMc04093 0.14 -0.9 3,635,025 - SMc04093 0.14 -0.0
Or see this region's nucleotide sequence