Strain Fitness in Sinorhizobium meliloti 1021 around SMc03878
Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,545,108 | + | -0.2 | |||
3,545,108 | + | +1.7 | |||
3,545,108 | + | +1.3 | |||
3,545,108 | + | -0.7 | |||
3,545,109 | - | +0.2 | |||
3,545,109 | - | -1.0 | |||
3,545,109 | - | +0.7 | |||
3,545,109 | - | +0.7 | |||
3,545,117 | + | +0.1 | |||
3,545,117 | + | -0.7 | |||
3,545,133 | + | -0.6 | |||
3,545,191 | - | +1.1 | |||
3,545,247 | + | +1.5 | |||
3,545,264 | + | -0.5 | |||
3,545,353 | - | +0.3 | |||
3,545,354 | + | -0.8 | |||
3,545,355 | - | +0.7 | |||
3,545,356 | + | -0.3 | |||
3,545,372 | + | -0.9 | |||
3,545,373 | - | +0.6 | |||
3,545,544 | - | -0.1 | |||
3,545,637 | + | -0.4 | |||
3,545,825 | - | SMc03878 | 0.17 | -1.2 | |
3,545,891 | + | SMc03878 | 0.26 | -2.7 | |
3,545,892 | - | SMc03878 | 0.26 | -1.8 | |
3,545,988 | - | SMc03878 | 0.40 | -2.0 | |
3,546,251 | + | SMc03878 | 0.76 | +1.0 | |
3,546,251 | + | SMc03878 | 0.76 | -3.3 | |
3,546,427 | - | -0.8 | |||
3,547,070 | + | SMc03879 | 0.45 | -0.8 | |
3,547,071 | - | SMc03879 | 0.45 | -0.9 | |
3,547,071 | - | SMc03879 | 0.45 | +1.2 | |
3,547,071 | - | SMc03879 | 0.45 | +0.1 | |
3,547,091 | - | SMc03879 | 0.46 | -0.3 | |
3,547,314 | - | SMc03879 | 0.65 | -0.3 |
Or see this region's nucleotide sequence