Strain Fitness in Sinorhizobium meliloti 1021 around SMc03789
Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,454,859 | - | SMc03788 | 0.70 | -2.9 | |
3,454,914 | + | SMc03788 | 0.72 | -1.0 | |
3,454,945 | - | SMc03788 | 0.73 | -2.5 | |
3,454,945 | - | SMc03788 | 0.73 | -1.5 | |
3,455,064 | + | SMc03788 | 0.76 | -1.9 | |
3,455,271 | + | SMc03788 | 0.82 | +0.3 | |
3,455,286 | + | SMc03788 | 0.83 | -1.5 | |
3,455,376 | + | SMc03788 | 0.86 | -2.4 | |
3,455,376 | + | SMc03788 | 0.86 | -0.2 | |
3,455,376 | + | SMc03788 | 0.86 | -3.7 | |
3,455,377 | - | SMc03788 | 0.86 | -1.8 | |
3,455,398 | - | SMc03788 | 0.86 | -2.1 | |
3,455,771 | + | -2.0 | |||
3,455,771 | + | -3.8 | |||
3,455,772 | - | -3.1 | |||
3,455,967 | - | -1.6 | |||
3,456,410 | + | SMc03789 | 0.34 | -2.1 | |
3,456,517 | + | SMc03789 | 0.41 | -3.0 | |
3,456,518 | - | SMc03789 | 0.41 | -0.2 | |
3,457,107 | + | SMc03789 | 0.77 | -1.0 | |
3,457,108 | - | SMc03789 | 0.78 | -3.3 | |
3,457,108 | - | SMc03789 | 0.78 | -4.6 | |
3,457,251 | + | SMc03789 | 0.86 | -1.0 | |
3,457,455 | + | -3.4 | |||
3,457,863 | + | SMc03790 | 0.58 | -1.3 | |
3,457,864 | - | SMc03790 | 0.58 | -4.1 | |
3,457,885 | - | +1.3 | |||
3,457,971 | + | SMc03790 | 0.69 | -1.8 | |
3,457,971 | + | SMc03790 | 0.69 | -1.6 | |
3,457,971 | + | SMc03790 | 0.69 | -1.7 | |
3,458,410 | + | +0.4 | |||
3,458,412 | + | -1.7 | |||
3,458,413 | - | +0.7 | |||
3,458,413 | - | -0.5 | |||
3,458,413 | - | -0.3 |
Or see this region's nucleotide sequence