Strain Fitness in Sinorhizobium meliloti 1021 around SMc03092
Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,255,501 | - | SMc03094 | 0.69 | +0.1 | |
3,255,501 | - | SMc03094 | 0.69 | -0.5 | |
3,255,598 | + | SMc03094 | 0.82 | +0.1 | |
3,255,599 | - | SMc03094 | 0.82 | -2.4 | |
3,255,599 | - | SMc03094 | 0.82 | +0.7 | |
3,255,857 | + | SMc03093 | 0.15 | +0.6 | |
3,255,857 | + | SMc03093 | 0.15 | -0.0 | |
3,255,858 | - | SMc03093 | 0.16 | -2.4 | |
3,255,858 | - | SMc03093 | 0.16 | -0.2 | |
3,256,171 | + | SMc03093 | 0.81 | -0.2 | |
3,256,219 | - | -0.2 | |||
3,256,252 | + | -0.0 | |||
3,256,257 | - | +0.5 | |||
3,256,257 | - | -0.4 | |||
3,256,257 | - | +0.1 | |||
3,256,316 | - | -0.2 | |||
3,256,530 | + | SMc03092 | 0.14 | -1.1 | |
3,256,531 | - | SMc03092 | 0.14 | +0.5 | |
3,256,531 | - | SMc03092 | 0.14 | -1.9 | |
3,256,531 | - | SMc03092 | 0.14 | -1.1 | |
3,256,531 | - | SMc03092 | 0.14 | -0.4 | |
3,257,155 | + | SMc03091 | 0.10 | +0.2 | |
3,257,571 | + | SMc03091 | 0.55 | -0.4 | |
3,257,571 | + | SMc03091 | 0.55 | +3.9 | |
3,257,572 | - | SMc03091 | 0.55 | -1.7 | |
3,257,572 | - | SMc03091 | 0.55 | -2.0 | |
3,257,572 | - | SMc03091 | 0.55 | -2.3 | |
3,257,646 | - | SMc03091 | 0.63 | +2.7 |
Or see this region's nucleotide sequence