Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02870 and SMc02871 overlap by 4 nucleotides SMc02871 and SMc02872 are separated by 12 nucleotides SMc02872 and SMc02873 are separated by 268 nucleotides
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 <small>(from data)</small>, at 226,852 to 227,691
SMc02871
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
SMc02873: SMc02873 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component <small>(from data)</small>, at 228,920 to 230,179
SMc02873
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.907 kb on + strand at 226.907 kb on + strand at 227.219 kb on - strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.247 kb on - strand, within SMc02871 at 227.272 kb on - strand, within SMc02871 at 227.354 kb on + strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.474 kb on + strand, within SMc02871 at 227.631 kb on - strand at 227.631 kb on - strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.697 kb on - strand at 227.705 kb on + strand at 227.706 kb on - strand at 227.706 kb on - strand at 227.734 kb on + strand at 227.735 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.912 kb on + strand, within SMc02872 at 227.913 kb on - strand, within SMc02872 at 227.913 kb on - strand at 227.913 kb on - strand, within SMc02872 at 228.080 kb on + strand, within SMc02872 at 228.105 kb on + strand, within SMc02872 at 228.106 kb on - strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.291 kb on + strand, within SMc02872 at 228.302 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.507 kb on - strand, within SMc02872 at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.922 kb on - strand at 229.040 kb on - strand at 229.066 kb on - strand, within SMc02873 at 229.185 kb on + strand, within SMc02873 at 229.294 kb on + strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.441 kb on - strand, within SMc02873 at 229.471 kb on - strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 226,779 + +0.4 226,804 + -0.6 226,805 - -0.3 226,907 + +0.2 226,907 + -0.7 227,219 - SMc02871 0.44 -2.5 227,246 + SMc02871 0.47 -0.3 227,246 + SMc02871 0.47 -0.0 227,246 + SMc02871 0.47 -1.0 227,247 - SMc02871 0.47 +0.2 227,272 - SMc02871 0.50 +0.5 227,354 + SMc02871 0.60 -1.6 227,355 - SMc02871 0.60 +0.2 227,355 - SMc02871 0.60 -1.1 227,355 - SMc02871 0.60 -0.2 227,474 + SMc02871 0.74 +0.0 227,631 - +0.2 227,631 - -1.8 227,696 + +0.8 227,697 - +0.0 227,697 - +0.1 227,705 + -0.4 227,706 - -0.6 227,706 - +0.2 227,734 + -0.6 227,735 - -1.2 227,748 - +1.4 227,748 - -2.1 227,748 - +0.8 227,912 + SMc02872 0.22 +0.9 227,913 - SMc02872 0.22 -0.5 227,913 - +0.8 227,913 - SMc02872 0.22 -1.4 228,080 + SMc02872 0.40 +0.2 228,105 + SMc02872 0.42 +0.5 228,106 - SMc02872 0.42 -0.1 228,107 + SMc02872 0.43 -0.0 228,107 + SMc02872 0.43 -1.5 228,107 + SMc02872 0.43 -1.9 228,108 - SMc02872 0.43 -0.8 228,108 - SMc02872 0.43 -0.3 228,206 + SMc02872 0.53 -0.9 228,206 + SMc02872 0.53 -0.3 228,207 - SMc02872 0.53 -0.8 228,207 - SMc02872 0.53 -0.9 228,291 + SMc02872 0.62 -0.0 228,302 + SMc02872 0.63 -1.5 228,506 + SMc02872 0.85 -0.1 228,506 + SMc02872 0.85 -0.4 228,506 + SMc02872 0.85 +0.4 228,507 - SMc02872 0.85 +0.3 228,626 + -1.6 228,626 + +0.3 228,626 + -0.2 228,626 + +0.3 228,627 - +3.2 228,627 - -0.0 228,627 - +1.0 228,922 - -2.5 229,040 - +0.2 229,066 - SMc02873 0.12 -0.5 229,185 + SMc02873 0.21 -0.3 229,294 + SMc02873 0.30 +0.6 229,295 - SMc02873 0.30 +1.7 229,295 - SMc02873 0.30 -0.4 229,295 - SMc02873 0.30 -1.6 229,296 + SMc02873 0.30 +0.6 229,296 + SMc02873 0.30 +0.4 229,296 + SMc02873 0.30 -0.8 229,296 + SMc02873 0.30 +0.6 229,296 + SMc02873 0.30 -0.6 229,297 - SMc02873 0.30 +0.4 229,297 - SMc02873 0.30 +1.4 229,297 - SMc02873 0.30 +0.7 229,297 - SMc02873 0.30 -2.5 229,441 - SMc02873 0.41 -0.0 229,471 - SMc02873 0.44 -0.2 229,575 + SMc02873 0.52 +3.4 229,575 + SMc02873 0.52 +0.9 229,650 + SMc02873 0.58 +0.3 229,650 + SMc02873 0.58 -0.4 229,650 + SMc02873 0.58 -1.6 229,650 + SMc02873 0.58 +0.9 229,650 + SMc02873 0.58 -0.1 229,651 - SMc02873 0.58 +0.2 229,651 - SMc02873 0.58 -1.3 229,651 - SMc02873 0.58 -2.5
Or see this region's nucleotide sequence