Strain Fitness in Sinorhizobium meliloti 1021 around SMc02596

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02595 and SMc02596 are separated by 140 nucleotidesSMc02596 and SMc04463 are separated by 75 nucleotidesSMc04463 and SMc02600 are separated by 48 nucleotides SMc02595: SMc02595 - cystathionine gamma-synthase, at 91,920 to 93,146 SMc02595 SMc02596: SMc02596 - transcriptional regulator, at 93,287 to 94,138 SMc02596 SMc04463: SMc04463 - hypothetical protein, at 94,214 to 94,570 SMc04463 SMc02600: SMc02600 - hypothetical protein, at 94,619 to 95,767 SMc02600 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 92.938 kb on + strand, within SMc02595at 92.939 kb on - strand, within SMc02595at 92.972 kb on - strand, within SMc02595at 92.986 kb on + strand, within SMc02595at 92.986 kb on + strand, within SMc02595at 92.986 kb on + strand, within SMc02595at 92.987 kb on - strand, within SMc02595at 92.987 kb on - strand, within SMc02595at 92.987 kb on - strand, within SMc02595at 92.987 kb on - strand, within SMc02595at 92.987 kb on - strand, within SMc02595at 93.093 kb on + strandat 93.093 kb on + strandat 93.093 kb on + strandat 93.094 kb on - strandat 93.094 kb on - strandat 93.222 kb on + strandat 93.222 kb on + strandat 93.307 kb on + strandat 93.308 kb on - strandat 93.498 kb on + strand, within SMc02596at 93.498 kb on + strand, within SMc02596at 93.499 kb on - strand, within SMc02596at 93.508 kb on - strand, within SMc02596at 93.723 kb on - strand, within SMc02596at 93.752 kb on - strand, within SMc02596at 93.793 kb on + strand, within SMc02596at 93.794 kb on - strand, within SMc02596at 93.866 kb on + strand, within SMc02596at 93.962 kb on + strand, within SMc02596at 93.989 kb on + strand, within SMc02596at 93.990 kb on - strand, within SMc02596at 94.049 kb on + strand, within SMc02596at 94.050 kb on - strand, within SMc02596at 94.050 kb on - strand, within SMc02596at 94.081 kb on + strandat 94.081 kb on + strandat 94.081 kb on + strandat 94.081 kb on + strandat 94.082 kb on - strandat 94.181 kb on + strandat 94.181 kb on + strandat 94.182 kb on - strandat 94.229 kb on - strandat 94.286 kb on + strand, within SMc04463at 94.287 kb on - strand, within SMc04463at 94.367 kb on + strand, within SMc04463at 94.368 kb on - strand, within SMc04463at 94.461 kb on + strand, within SMc04463at 94.461 kb on + strand, within SMc04463at 94.461 kb on + strand, within SMc04463at 94.461 kb on + strand, within SMc04463at 94.461 kb on + strand, within SMc04463at 94.462 kb on - strand, within SMc04463at 94.462 kb on - strand, within SMc04463at 94.462 kb on - strand, within SMc04463at 94.504 kb on - strand, within SMc04463at 94.596 kb on + strandat 94.597 kb on - strandat 94.597 kb on - strandat 94.597 kb on - strandat 94.599 kb on - strandat 94.601 kb on + strandat 94.602 kb on - strandat 94.646 kb on + strandat 94.663 kb on + strandat 94.883 kb on - strand, within SMc02600at 94.883 kb on - strand, within SMc02600at 94.921 kb on + strand, within SMc02600at 94.922 kb on - strand, within SMc02600at 94.986 kb on - strand, within SMc02600at 95.118 kb on - strand, within SMc02600at 95.118 kb on - strandat 95.129 kb on + strand, within SMc02600at 95.129 kb on + strand, within SMc02600at 95.129 kb on + strand, within SMc02600at 95.129 kb on + strand, within SMc02600at 95.129 kb on + strand, within SMc02600at 95.129 kb on + strand, within SMc02600at 95.130 kb on - strand, within SMc02600at 95.130 kb on - strand, within SMc02600at 95.130 kb on - strand, within SMc02600at 95.130 kb on - strand, within SMc02600

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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92,938 + SMc02595 0.83 +1.3
92,939 - SMc02595 0.83 -0.2
92,972 - SMc02595 0.86 -0.2
92,986 + SMc02595 0.87 -0.7
92,986 + SMc02595 0.87 +0.4
92,986 + SMc02595 0.87 +0.9
92,987 - SMc02595 0.87 +0.2
92,987 - SMc02595 0.87 +0.0
92,987 - SMc02595 0.87 -3.2
92,987 - SMc02595 0.87 -1.0
92,987 - SMc02595 0.87 +0.2
93,093 + +1.0
93,093 + -0.2
93,093 + +0.6
93,094 - +0.2
93,094 - +0.7
93,222 + +1.4
93,222 + -2.5
93,307 + -0.7
93,308 - -0.6
93,498 + SMc02596 0.25 +2.3
93,498 + SMc02596 0.25 +2.8
93,499 - SMc02596 0.25 -0.4
93,508 - SMc02596 0.26 +0.2
93,723 - SMc02596 0.51 -1.6
93,752 - SMc02596 0.55 -0.0
93,793 + SMc02596 0.59 -0.7
93,794 - SMc02596 0.60 -2.9
93,866 + SMc02596 0.68 -1.4
93,962 + SMc02596 0.79 +1.7
93,989 + SMc02596 0.82 +1.0
93,990 - SMc02596 0.83 -1.2
94,049 + SMc02596 0.89 -0.4
94,050 - SMc02596 0.90 +1.4
94,050 - SMc02596 0.90 -1.2
94,081 + +0.8
94,081 + +0.6
94,081 + +0.2
94,081 + -0.0
94,082 - +0.2
94,181 + +1.4
94,181 + +1.2
94,182 - +0.2
94,229 - +0.3
94,286 + SMc04463 0.20 -3.4
94,287 - SMc04463 0.20 -0.5
94,367 + SMc04463 0.43 -1.0
94,368 - SMc04463 0.43 -0.2
94,461 + SMc04463 0.69 -2.8
94,461 + SMc04463 0.69 +0.4
94,461 + SMc04463 0.69 -2.0
94,461 + SMc04463 0.69 -2.0
94,461 + SMc04463 0.69 +1.0
94,462 - SMc04463 0.69 -0.6
94,462 - SMc04463 0.69 -1.0
94,462 - SMc04463 0.69 +0.3
94,504 - SMc04463 0.81 -0.1
94,596 + -0.2
94,597 - +0.4
94,597 - +0.8
94,597 - -0.6
94,599 - -0.3
94,601 + +0.2
94,602 - +0.3
94,646 + -0.6
94,663 + -1.8
94,883 - SMc02600 0.23 +0.1
94,883 - SMc02600 0.23 +0.1
94,921 + SMc02600 0.26 +1.2
94,922 - SMc02600 0.26 -0.5
94,986 - SMc02600 0.32 -0.7
95,118 - SMc02600 0.43 -0.5
95,118 - -0.6
95,129 + SMc02600 0.44 +0.2
95,129 + SMc02600 0.44 -0.2
95,129 + SMc02600 0.44 -1.1
95,129 + SMc02600 0.44 -2.7
95,129 + SMc02600 0.44 -0.6
95,129 + SMc02600 0.44 +0.3
95,130 - SMc02600 0.44 -0.2
95,130 - SMc02600 0.44 -0.7
95,130 - SMc02600 0.44 +0.5
95,130 - SMc02600 0.44 -0.0

Or see this region's nucleotide sequence