Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01957 and SMc01994 are separated by 564 nucleotides SMc01994 and SMc01959 overlap by 4 nucleotides SMc01959 and SMc01960 are separated by 354 nucleotides
SMc01957: SMc01957 - hypothetical protein, at 2,680,164 to 2,680,478
SMc01957
SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873
SMc01994
SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241
SMc01959
SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162
SMc01960
Position (kb)
2681
2682 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2680.147 kb on + strand at 2680.294 kb on + strand, within SMc01957 at 2680.295 kb on - strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.438 kb on + strand, within SMc01957 at 2680.455 kb on + strand at 2680.491 kb on + strand at 2680.493 kb on + strand at 2680.494 kb on - strand at 2680.525 kb on + strand at 2680.540 kb on + strand at 2680.541 kb on - strand at 2680.541 kb on - strand at 2680.653 kb on + strand at 2680.654 kb on - strand at 2680.665 kb on + strand at 2680.666 kb on - strand at 2680.666 kb on - strand at 2680.709 kb on + strand at 2680.712 kb on + strand at 2680.790 kb on - strand at 2680.819 kb on + strand at 2680.834 kb on + strand at 2680.834 kb on + strand at 2680.834 kb on + strand at 2680.835 kb on - strand at 2680.835 kb on - strand at 2680.863 kb on + strand at 2680.864 kb on - strand at 2680.905 kb on + strand at 2680.929 kb on + strand at 2680.929 kb on + strand at 2680.929 kb on + strand at 2680.930 kb on - strand at 2680.930 kb on - strand at 2680.932 kb on - strand at 2682.288 kb on + strand at 2682.288 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.473 kb on + strand at 2682.593 kb on - strand at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 2,680,147 + -1.9 2,680,294 + SMc01957 0.41 +1.3 2,680,295 - SMc01957 0.42 +1.4 2,680,394 + SMc01957 0.73 -2.4 2,680,394 + SMc01957 0.73 +0.1 2,680,394 + SMc01957 0.73 +0.2 2,680,394 + SMc01957 0.73 +2.7 2,680,438 + SMc01957 0.87 +0.8 2,680,455 + -0.3 2,680,491 + -2.3 2,680,493 + +0.1 2,680,494 - -1.1 2,680,525 + -0.4 2,680,540 + +1.9 2,680,541 - -1.7 2,680,541 - +1.0 2,680,653 + -0.5 2,680,654 - -0.2 2,680,665 + +0.5 2,680,666 - +0.3 2,680,666 - -0.5 2,680,709 + -0.2 2,680,712 + -1.2 2,680,790 - +1.5 2,680,819 + +0.9 2,680,834 + -0.6 2,680,834 + -2.0 2,680,834 + -0.4 2,680,835 - +0.3 2,680,835 - +1.4 2,680,863 + +0.1 2,680,864 - +0.5 2,680,905 + -0.2 2,680,929 + +0.9 2,680,929 + +2.0 2,680,929 + -0.7 2,680,930 - -1.9 2,680,930 - -0.0 2,680,932 - +0.1 2,682,288 + -1.1 2,682,288 + -2.8 2,682,292 + -0.0 2,682,292 + +0.5 2,682,292 + -1.3 2,682,473 + -0.3 2,682,593 - +0.7 2,682,851 + SMc01960 0.45 -0.1 2,682,851 + SMc01960 0.45 +0.6 2,682,851 + SMc01960 0.45 +0.3 2,682,851 + SMc01960 0.45 -0.4 2,682,851 + SMc01960 0.45 -1.0 2,682,852 - SMc01960 0.45 +0.1 2,682,852 - SMc01960 0.45 +1.8
Or see this region's nucleotide sequence