Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01640 and SMc01641 overlap by 4 nucleotides SMc01641 and SMc01642 are separated by 340 nucleotides
SMc01640: SMc01640 - acyl-COA synthetase, at 2,433,628 to 2,435,691
SMc01640
SMc01641: SMc01641 - carnitinyl-CoA dehydratase, at 2,435,688 to 2,436,479
SMc01641
SMc01642: SMc01642 - periplasmic binding protein, at 2,436,820 to 2,438,409
SMc01642
Position (kb)
2435
2436
2437 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2435.466 kb on + strand, within SMc01640 at 2435.552 kb on + strand at 2435.553 kb on - strand at 2435.553 kb on - strand at 2435.578 kb on + strand at 2435.578 kb on + strand at 2435.578 kb on + strand at 2435.579 kb on - strand at 2435.579 kb on - strand at 2435.626 kb on - strand at 2435.628 kb on - strand at 2435.931 kb on + strand, within SMc01641 at 2435.932 kb on - strand, within SMc01641 at 2436.148 kb on - strand, within SMc01641 at 2436.153 kb on - strand, within SMc01641 at 2436.405 kb on + strand at 2436.406 kb on - strand at 2436.406 kb on - strand at 2436.406 kb on - strand at 2436.483 kb on - strand at 2436.623 kb on + strand at 2436.624 kb on - strand at 2436.644 kb on + strand at 2436.645 kb on - strand at 2436.758 kb on + strand at 2436.771 kb on + strand at 2436.772 kb on - strand at 2436.772 kb on - strand at 2436.829 kb on + strand at 2436.830 kb on - strand at 2436.838 kb on + strand at 2436.839 kb on - strand at 2436.839 kb on - strand at 2436.839 kb on - strand at 2436.931 kb on - strand at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642 at 2437.448 kb on - strand, within SMc01642
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 2,435,466 + SMc01640 0.89 -0.3 2,435,552 + -1.2 2,435,553 - +0.5 2,435,553 - -0.7 2,435,578 + +0.0 2,435,578 + -0.6 2,435,578 + +0.2 2,435,579 - +0.1 2,435,579 - -2.1 2,435,626 - +0.4 2,435,628 - +0.5 2,435,931 + SMc01641 0.31 -1.1 2,435,932 - SMc01641 0.31 -2.7 2,436,148 - SMc01641 0.58 +0.1 2,436,153 - SMc01641 0.59 -3.2 2,436,405 + -0.6 2,436,406 - +1.3 2,436,406 - +0.8 2,436,406 - +0.4 2,436,483 - +1.1 2,436,623 + -0.1 2,436,624 - -1.5 2,436,644 + -0.1 2,436,645 - -0.0 2,436,758 + +0.6 2,436,771 + +0.2 2,436,772 - +0.7 2,436,772 - +0.4 2,436,829 + -1.6 2,436,830 - -0.8 2,436,838 + -1.1 2,436,839 - +0.8 2,436,839 - -1.1 2,436,839 - -3.3 2,436,931 - -0.7 2,437,448 - SMc01642 0.39 -0.5 2,437,448 - SMc01642 0.39 -1.1 2,437,448 - SMc01642 0.39 +0.9 2,437,448 - SMc01642 0.39 +0.9
Or see this region's nucleotide sequence