Strain Fitness in Sinorhizobium meliloti 1021 around SMc01428
Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,271,700 | - | SMc01426 | 0.45 | +0.4 | |
2,271,721 | - | SMc01426 | 0.48 | +0.7 | |
2,271,759 | - | SMc01426 | 0.53 | -1.1 | |
2,271,810 | + | SMc01426 | 0.60 | -0.0 | |
2,271,810 | + | SMc01426 | 0.60 | -0.1 | |
2,271,810 | + | SMc01426 | 0.60 | +0.1 | |
2,271,811 | - | SMc01426 | 0.61 | -1.6 | |
2,271,934 | - | SMc01426 | 0.78 | -3.1 | |
2,272,095 | + | +1.0 | |||
2,272,124 | - | +1.0 | |||
2,272,124 | - | +0.2 | |||
2,272,399 | + | SMc01427 | 0.88 | -1.2 | |
2,272,508 | + | +0.9 | |||
2,272,509 | - | -1.7 | |||
2,272,538 | - | +0.4 | |||
2,272,558 | + | +1.1 | |||
2,272,648 | - | SMc01428 | 0.32 | +0.8 | |
2,272,701 | - | SMc01428 | 0.57 | -0.1 | |
2,272,773 | + | -0.9 | |||
2,272,774 | - | -0.2 | |||
2,272,926 | + | -0.3 | |||
2,272,926 | + | +2.3 | |||
2,272,927 | - | -0.2 | |||
2,272,930 | + | +0.5 | |||
2,272,951 | - | -1.3 | |||
2,273,033 | + | -0.5 | |||
2,273,034 | - | +0.1 | |||
2,273,063 | - | +1.1 | |||
2,273,269 | + | SMc01429 | 0.20 | +0.1 | |
2,273,434 | + | SMc01429 | 0.39 | +0.5 | |
2,273,434 | + | SMc01429 | 0.39 | +0.2 | |
2,273,608 | + | SMc01429 | 0.60 | -0.9 | |
2,273,609 | - | SMc01429 | 0.60 | +0.3 | |
2,273,610 | + | SMc01429 | 0.60 | +0.3 |
Or see this region's nucleotide sequence