Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01368 and SMc01367 are separated by 12 nucleotides SMc01367 and SMc01366 overlap by 4 nucleotides SMc01366 and SMc01365 are separated by 36 nucleotides
SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407
SMc01368
SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136
SMc01367
SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588
SMc01366
SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994
SMc01365
Position (kb)
1413
1414
1415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1412.454 kb on - strand, within SMc01368 at 1412.456 kb on - strand, within SMc01368 at 1412.456 kb on - strand, within SMc01368 at 1412.526 kb on - strand, within SMc01368 at 1412.579 kb on + strand, within SMc01368 at 1412.785 kb on + strand, within SMc01368 at 1412.786 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.106 kb on + strand, within SMc01368 at 1413.461 kb on - strand at 1413.698 kb on + strand, within SMc01367 at 1413.698 kb on + strand, within SMc01367 at 1413.713 kb on + strand, within SMc01367 at 1413.714 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.786 kb on + strand, within SMc01367 at 1413.828 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.962 kb on - strand, within SMc01367 at 1414.310 kb on - strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.380 kb on + strand, within SMc01366 at 1414.781 kb on + strand at 1414.781 kb on + strand at 1414.782 kb on - strand at 1414.863 kb on + strand, within SMc01365 at 1414.864 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.889 kb on - strand, within SMc01365 at 1414.892 kb on + strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.893 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1414.895 kb on - strand, within SMc01365 at 1415.026 kb on + strand, within SMc01365 at 1415.081 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365 at 1415.112 kb on - strand, within SMc01365
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,412,454 - SMc01368 0.19 -2.0 1,412,456 - SMc01368 0.20 +1.4 1,412,456 - SMc01368 0.20 +0.1 1,412,526 - SMc01368 0.26 -0.0 1,412,579 + SMc01368 0.30 -1.9 1,412,785 + SMc01368 0.47 -0.6 1,412,786 - SMc01368 0.48 -2.0 1,413,104 - SMc01368 0.74 -0.8 1,413,104 - SMc01368 0.74 +1.2 1,413,104 - SMc01368 0.74 -1.6 1,413,106 + SMc01368 0.75 -0.7 1,413,461 - +1.7 1,413,698 + SMc01367 0.39 -3.2 1,413,698 + SMc01367 0.39 -0.8 1,413,713 + SMc01367 0.41 -3.3 1,413,714 - SMc01367 0.41 -3.0 1,413,716 - SMc01367 0.41 -1.4 1,413,716 - SMc01367 0.41 -0.2 1,413,786 + SMc01367 0.51 -1.5 1,413,828 + SMc01367 0.57 +0.0 1,413,961 + SMc01367 0.75 -0.8 1,413,961 + SMc01367 0.75 -0.5 1,413,961 + SMc01367 0.75 -1.1 1,413,962 - SMc01367 0.76 +1.2 1,414,310 - SMc01366 0.39 -0.8 1,414,336 + SMc01366 0.45 +0.3 1,414,336 + SMc01366 0.45 -0.9 1,414,338 + SMc01366 0.45 +1.3 1,414,338 + SMc01366 0.45 -0.5 1,414,379 - SMc01366 0.54 +0.0 1,414,379 - SMc01366 0.54 +0.7 1,414,380 + SMc01366 0.54 +0.3 1,414,781 + -2.0 1,414,781 + +1.5 1,414,782 - -1.6 1,414,863 + SMc01365 0.10 -0.6 1,414,864 - SMc01365 0.10 +0.2 1,414,889 - SMc01365 0.11 -1.0 1,414,889 - SMc01365 0.11 -0.1 1,414,892 + SMc01365 0.11 -0.3 1,414,893 - SMc01365 0.11 -0.0 1,414,893 - SMc01365 0.11 -0.9 1,414,893 - SMc01365 0.11 -1.6 1,414,895 - SMc01365 0.11 -0.0 1,414,895 - SMc01365 0.11 -0.6 1,415,026 + SMc01365 0.17 -0.7 1,415,081 - SMc01365 0.19 -0.3 1,415,112 - SMc01365 0.21 -0.0 1,415,112 - SMc01365 0.21 -2.0
Or see this region's nucleotide sequence