Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01005 and SMc01006 are separated by 338 nucleotides SMc01006 and SMc01007 are separated by 3 nucleotides SMc01007 and SMc01008 overlap by 4 nucleotides SMc01008 and SMc01009 overlap by 4 nucleotides
SMc01005: SMc01005 - GTP cyclohydrolase I, at 1,531,837 to 1,532,451
SMc01005
SMc01006: SMc01006 - hypothetical protein, at 1,532,790 to 1,533,236
SMc01006
SMc01007: SMc01007 - hypothetical protein, at 1,533,240 to 1,533,614
SMc01007
SMc01008: SMc01008 - hypothetical protein, at 1,533,611 to 1,534,048
SMc01008
SMc01009: SMc01009 - hypothetical protein, at 1,534,045 to 1,534,584
SMc01009
Position (kb) 1533
1534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1532.470 kb on - strand at 1532.579 kb on - strand at 1532.665 kb on - strand at 1532.665 kb on - strand at 1532.665 kb on - strand at 1532.670 kb on - strand at 1532.670 kb on - strand at 1532.670 kb on - strand at 1532.670 kb on - strand at 1532.670 kb on - strand at 1532.670 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.672 kb on - strand at 1532.675 kb on - strand at 1532.805 kb on + strand at 1533.019 kb on + strand, within SMc01006 at 1533.019 kb on + strand, within SMc01006 at 1533.020 kb on - strand, within SMc01006 at 1533.141 kb on + strand, within SMc01006 at 1533.141 kb on + strand, within SMc01006 at 1533.142 kb on - strand, within SMc01006 at 1533.142 kb on - strand, within SMc01006 at 1533.369 kb on + strand, within SMc01007 at 1533.433 kb on - strand, within SMc01007 at 1533.638 kb on + strand at 1533.719 kb on + strand, within SMc01008 at 1533.719 kb on + strand, within SMc01008 at 1533.721 kb on + strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.722 kb on - strand, within SMc01008 at 1533.743 kb on + strand, within SMc01008 at 1533.743 kb on + strand, within SMc01008 at 1533.743 kb on + strand, within SMc01008 at 1533.946 kb on - strand, within SMc01008 at 1533.946 kb on - strand, within SMc01008 at 1534.054 kb on + strand at 1534.103 kb on + strand, within SMc01009 at 1534.104 kb on - strand, within SMc01009 at 1534.104 kb on - strand, within SMc01009 at 1534.104 kb on - strand, within SMc01009 at 1534.440 kb on - strand, within SMc01009 at 1534.553 kb on + strand at 1534.554 kb on - strand at 1534.554 kb on - strand at 1534.554 kb on - strand at 1534.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,532,470 - -0.4 1,532,579 - -0.1 1,532,665 - +1.1 1,532,665 - -0.4 1,532,665 - -0.1 1,532,670 - +2.2 1,532,670 - -1.2 1,532,670 - +0.1 1,532,670 - -0.4 1,532,670 - -0.3 1,532,670 - -2.1 1,532,672 - -3.1 1,532,672 - +0.1 1,532,672 - +0.0 1,532,672 - -2.6 1,532,672 - -0.2 1,532,672 - +0.1 1,532,672 - +0.4 1,532,672 - -0.0 1,532,672 - +1.5 1,532,672 - +1.0 1,532,672 - +0.3 1,532,675 - +0.8 1,532,805 + -0.1 1,533,019 + SMc01006 0.51 +0.3 1,533,019 + SMc01006 0.51 +1.0 1,533,020 - SMc01006 0.51 -1.6 1,533,141 + SMc01006 0.79 +1.2 1,533,141 + SMc01006 0.79 +0.3 1,533,142 - SMc01006 0.79 +0.6 1,533,142 - SMc01006 0.79 -2.6 1,533,369 + SMc01007 0.34 +3.8 1,533,433 - SMc01007 0.51 -2.2 1,533,638 + +0.7 1,533,719 + SMc01008 0.25 -0.4 1,533,719 + SMc01008 0.25 -0.1 1,533,721 + SMc01008 0.25 +0.9 1,533,722 - SMc01008 0.25 +2.4 1,533,722 - SMc01008 0.25 +0.4 1,533,722 - SMc01008 0.25 -0.4 1,533,722 - SMc01008 0.25 -0.3 1,533,722 - SMc01008 0.25 +0.6 1,533,722 - SMc01008 0.25 +0.0 1,533,743 + SMc01008 0.30 -1.4 1,533,743 + SMc01008 0.30 +0.6 1,533,743 + SMc01008 0.30 +0.3 1,533,946 - SMc01008 0.76 +0.2 1,533,946 - SMc01008 0.76 +0.4 1,534,054 + -0.3 1,534,103 + SMc01009 0.11 +0.1 1,534,104 - SMc01009 0.11 +1.4 1,534,104 - SMc01009 0.11 +0.8 1,534,104 - SMc01009 0.11 +1.2 1,534,440 - SMc01009 0.73 +0.4 1,534,553 + +1.1 1,534,554 - +2.0 1,534,554 - +0.3 1,534,554 - -0.4 1,534,598 + +0.1
Or see this region's nucleotide sequence