Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00977 and SMc00976 are separated by 9 nucleotides SMc00976 and SMc00975 are separated by 256 nucleotides
SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575
SMc00977
SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337
SMc00976
SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717
SMc00975
Position (kb)
962
963
964 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 961.592 kb on + strand, within SMc00977 at 961.758 kb on - strand, within SMc00977 at 961.892 kb on + strand, within SMc00977 at 962.085 kb on - strand, within SMc00977 at 962.115 kb on - strand, within SMc00977 at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.621 kb on + strand at 962.687 kb on + strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 963.335 kb on + strand at 963.394 kb on + strand at 963.394 kb on + strand at 963.395 kb on - strand at 963.395 kb on - strand at 963.421 kb on - strand at 963.421 kb on - strand at 963.705 kb on + strand at 963.706 kb on - strand at 963.706 kb on - strand at 963.707 kb on + strand at 963.922 kb on - strand, within SMc00975 at 964.005 kb on + strand, within SMc00975 at 964.051 kb on - strand, within SMc00975
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 961,592 + SMc00977 0.45 +0.7 961,758 - SMc00977 0.54 +0.0 961,892 + SMc00977 0.62 +0.2 962,085 - SMc00977 0.72 +0.2 962,115 - SMc00977 0.74 -1.0 962,408 + -2.2 962,408 + +1.0 962,408 + -2.5 962,408 + +1.2 962,621 + -0.4 962,687 + SMc00976 0.14 +0.8 962,688 - SMc00976 0.14 +3.8 962,688 - SMc00976 0.14 +0.0 963,335 + -1.9 963,394 + -0.3 963,394 + -2.1 963,395 - +1.2 963,395 - -2.5 963,421 - +0.2 963,421 - -2.7 963,705 + +0.7 963,706 - +0.2 963,706 - -0.3 963,707 + -0.4 963,922 - SMc00975 0.15 +1.2 964,005 + SMc00975 0.19 -0.1 964,051 - SMc00975 0.22 -0.5
Or see this region's nucleotide sequence