Strain Fitness in Sinorhizobium meliloti 1021 around SMc00976

Experiment: Cisplatin 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00977 and SMc00976 are separated by 9 nucleotidesSMc00976 and SMc00975 are separated by 256 nucleotides SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575 SMc00977 SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337 SMc00976 SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717 SMc00975 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 961.592 kb on + strand, within SMc00977at 961.758 kb on - strand, within SMc00977at 961.892 kb on + strand, within SMc00977at 962.085 kb on - strand, within SMc00977at 962.115 kb on - strand, within SMc00977at 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.621 kb on + strandat 962.687 kb on + strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 963.335 kb on + strandat 963.394 kb on + strandat 963.394 kb on + strandat 963.395 kb on - strandat 963.395 kb on - strandat 963.421 kb on - strandat 963.421 kb on - strandat 963.705 kb on + strandat 963.706 kb on - strandat 963.706 kb on - strandat 963.707 kb on + strandat 963.922 kb on - strand, within SMc00975at 964.005 kb on + strand, within SMc00975at 964.051 kb on - strand, within SMc00975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
remove
961,592 + SMc00977 0.45 +0.7
961,758 - SMc00977 0.54 +0.0
961,892 + SMc00977 0.62 +0.2
962,085 - SMc00977 0.72 +0.2
962,115 - SMc00977 0.74 -1.0
962,408 + -2.2
962,408 + +1.0
962,408 + -2.5
962,408 + +1.2
962,621 + -0.4
962,687 + SMc00976 0.14 +0.8
962,688 - SMc00976 0.14 +3.8
962,688 - SMc00976 0.14 +0.0
963,335 + -1.9
963,394 + -0.3
963,394 + -2.1
963,395 - +1.2
963,395 - -2.5
963,421 - +0.2
963,421 - -2.7
963,705 + +0.7
963,706 - +0.2
963,706 - -0.3
963,707 + -0.4
963,922 - SMc00975 0.15 +1.2
964,005 + SMc00975 0.19 -0.1
964,051 - SMc00975 0.22 -0.5

Or see this region's nucleotide sequence