Strain Fitness in Sinorhizobium meliloti 1021 around SMc00942

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00940 and SMc00941 are separated by 491 nucleotidesSMc00941 and SMc00942 are separated by 88 nucleotidesSMc00942 and SMc00943 are separated by 354 nucleotides SMc00940: SMc00940 - hypothetical protein, at 1,768,591 to 1,768,842 SMc00940 SMc00941: SMc00941 - hypothetical protein, at 1,769,334 to 1,769,552 SMc00941 SMc00942: SMc00942 - hypothetical protein, at 1,769,641 to 1,769,883 SMc00942 SMc00943: SMc00943 - TrpR binding protein WrbA, at 1,770,238 to 1,770,837 SMc00943 Position (kb) 1769 1770Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1768.826 kb on + strandat 1768.827 kb on - strandat 1768.827 kb on - strandat 1769.002 kb on + strandat 1769.002 kb on + strandat 1769.002 kb on + strandat 1769.036 kb on + strandat 1769.036 kb on + strandat 1769.079 kb on + strandat 1769.080 kb on - strandat 1769.080 kb on - strandat 1769.202 kb on - strandat 1769.341 kb on + strandat 1769.341 kb on + strandat 1769.341 kb on + strandat 1769.344 kb on + strandat 1769.344 kb on + strandat 1769.345 kb on - strandat 1769.345 kb on - strandat 1769.528 kb on + strand, within SMc00941at 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.545 kb on + strandat 1769.546 kb on - strandat 1769.546 kb on - strandat 1769.593 kb on + strandat 1769.594 kb on - strandat 1769.654 kb on - strandat 1769.817 kb on - strand, within SMc00942at 1769.898 kb on + strandat 1769.949 kb on + strandat 1769.949 kb on + strandat 1769.949 kb on + strandat 1769.949 kb on + strandat 1769.950 kb on - strandat 1770.026 kb on - strandat 1770.092 kb on + strandat 1770.142 kb on + strandat 1770.356 kb on + strand, within SMc00943at 1770.408 kb on - strand, within SMc00943at 1770.567 kb on + strand, within SMc00943at 1770.573 kb on + strand, within SMc00943at 1770.632 kb on + strand, within SMc00943at 1770.633 kb on - strand, within SMc00943at 1770.795 kb on + strandat 1770.815 kb on + strandat 1770.815 kb on + strandat 1770.816 kb on - strandat 1770.816 kb on - strandat 1770.827 kb on - strandat 1770.827 kb on - strandat 1770.843 kb on + strandat 1770.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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1,768,826 + -1.5
1,768,827 - +1.9
1,768,827 - +0.8
1,769,002 + -0.3
1,769,002 + -1.7
1,769,002 + +0.8
1,769,036 + -0.5
1,769,036 + +0.1
1,769,079 + +0.8
1,769,080 - +0.2
1,769,080 - +1.1
1,769,202 - -0.1
1,769,341 + +0.3
1,769,341 + +1.3
1,769,341 + -0.8
1,769,344 + -0.2
1,769,344 + -0.6
1,769,345 - -0.4
1,769,345 - -0.0
1,769,528 + SMc00941 0.89 +0.4
1,769,545 + +1.0
1,769,545 + -0.2
1,769,545 + +0.2
1,769,545 + -0.8
1,769,545 + +0.2
1,769,545 + +1.0
1,769,545 + -0.2
1,769,545 + +0.5
1,769,545 + -0.1
1,769,546 - -2.0
1,769,546 - -2.6
1,769,593 + +0.1
1,769,594 - -3.0
1,769,654 - -0.0
1,769,817 - SMc00942 0.72 +1.1
1,769,898 + -0.2
1,769,949 + +2.0
1,769,949 + +1.1
1,769,949 + -0.2
1,769,949 + +0.2
1,769,950 - +0.7
1,770,026 - -3.1
1,770,092 + +0.8
1,770,142 + -0.1
1,770,356 + SMc00943 0.20 +0.4
1,770,408 - SMc00943 0.28 +1.3
1,770,567 + SMc00943 0.55 -0.2
1,770,573 + SMc00943 0.56 -2.0
1,770,632 + SMc00943 0.66 -0.5
1,770,633 - SMc00943 0.66 -0.1
1,770,795 + -0.2
1,770,815 + -0.4
1,770,815 + +0.2
1,770,816 - -1.3
1,770,816 - -0.2
1,770,827 - -0.1
1,770,827 - +1.2
1,770,843 + -0.8
1,770,844 - -0.4

Or see this region's nucleotide sequence