Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00884 and SMc00883 are separated by 90 nucleotides SMc00883 and SMc00882 overlap by 4 nucleotides SMc00882 and SMc00881 are separated by 14 nucleotides
SMc00884: SMc00884 - dihydroxy-acid dehydratase, at 901,995 to 903,719
SMc00884
SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 903,810 to 904,694
SMc00883
SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329
SMc00882
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.856 kb on - strand, within SMc00884 at 903.382 kb on + strand, within SMc00884 at 903.399 kb on + strand, within SMc00884 at 903.537 kb on - strand, within SMc00884 at 903.582 kb on + strand at 903.811 kb on + strand at 903.811 kb on + strand at 903.812 kb on - strand at 903.994 kb on + strand, within SMc00883 at 904.022 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.168 kb on - strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.266 kb on - strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.301 kb on - strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.707 kb on + strand at 904.720 kb on - strand at 904.824 kb on + strand, within SMc00882 at 904.824 kb on + strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand at 905.122 kb on + strand, within SMc00882 at 905.234 kb on - strand, within SMc00882 at 905.271 kb on - strand at 905.271 kb on - strand at 905.271 kb on - strand at 905.342 kb on + strand at 905.445 kb on + strand, within SMc00881 at 905.451 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.657 kb on - strand, within SMc00881 at 905.694 kb on + strand, within SMc00881
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 902,856 - SMc00884 0.50 -3.7 903,382 + SMc00884 0.80 -0.5 903,399 + SMc00884 0.81 +0.6 903,537 - SMc00884 0.89 -0.0 903,582 + +0.0 903,811 + +0.2 903,811 + -0.1 903,812 - +1.1 903,994 + SMc00883 0.21 -1.1 904,022 + SMc00883 0.24 +1.8 904,024 + SMc00883 0.24 +0.5 904,024 + SMc00883 0.24 -3.1 904,167 + SMc00883 0.40 -0.9 904,167 + SMc00883 0.40 +1.8 904,167 + SMc00883 0.40 +1.3 904,167 + SMc00883 0.40 +0.1 904,168 - SMc00883 0.40 -2.3 904,265 + SMc00883 0.51 +0.1 904,265 + SMc00883 0.51 -2.5 904,266 - SMc00883 0.52 +0.8 904,300 + SMc00883 0.55 -0.7 904,300 + SMc00883 0.55 +2.2 904,300 + SMc00883 0.55 +0.6 904,301 - SMc00883 0.55 +0.2 904,586 + SMc00883 0.88 -0.1 904,586 + SMc00883 0.88 +0.4 904,587 - SMc00883 0.88 +0.9 904,587 - SMc00883 0.88 +1.4 904,587 - SMc00883 0.88 -0.8 904,587 - SMc00883 0.88 +1.1 904,707 + -1.6 904,720 - +1.1 904,824 + SMc00882 0.21 +0.8 904,824 + SMc00882 0.21 -0.7 904,825 - SMc00882 0.21 +0.3 904,825 - SMc00882 0.21 -0.2 904,825 - -1.5 905,122 + SMc00882 0.67 +0.3 905,234 - SMc00882 0.85 +1.3 905,271 - -1.1 905,271 - +1.3 905,271 - +1.3 905,342 + -2.5 905,445 + SMc00881 0.11 -0.2 905,451 - SMc00881 0.12 -0.3 905,486 - SMc00881 0.15 -2.4 905,486 - SMc00881 0.15 -1.7 905,486 - SMc00881 0.15 +0.6 905,486 - SMc00881 0.15 +0.5 905,656 + SMc00881 0.34 +0.5 905,656 + SMc00881 0.34 -0.2 905,657 - SMc00881 0.34 -1.0 905,694 + SMc00881 0.38 +0.7
Or see this region's nucleotide sequence